Labn003434.1
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- Trl
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010000586.1:14333-16594[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4e-08 9.2e-05 23.4 0.0 1 40 214 253 214 258 0.90 2 4 3.5e-12 8e-09 36.4 0.0 1 39 264 301 264 308 0.90 3 4 0.0024 5.4 8.1 0.0 7 34 323 349 322 356 0.83 4 4 2.6e-10 5.9e-07 30.4 0.0 4 40 380 416 377 420 0.92
Sequence Information
- Coding Sequence
- ATGGACGAGGGAGACGAGTCTGATATGCTGATGACAACAATAACATCAGATGCCGGTGACAAGAGCCACAACATAAAATGTGCCAACTATCGTCACCAGATATTCGAGGTCGTACGCCAGCTCCTCGCCGAGGAGTCCATGGTCGACCTAACGCTCTGCGTCGGAGGAGAGCGTATAAGTGCTCATCGTGTTGTTATGAGCAATTGTAGCTCCTTGTTCAAGGAAATTCTTTGCAAGGTTAATGAAGAACATACTACAATTCTACTCCCAGGCATAGAAGCACAGTACGTCAGGgctattattgaattttgttataatgGAGAGATCAGAATTCCATATGAAGATATTGAAAGCTTTTTAGAAGcttctcattttttaaaaattgaaggaCTAAAGGATATTGCTGGAATTGTTGAATCTGACAATTTGAATGATAAGGAAGAATTAGAAGAATATGTTCTTGAAGATATAGATACAATTGTTGATTCTGATGATAACATAGAAGACAGTTCAGAAGAAATCGTTGATAGAAGTAGTAATAATAGTAGtcctaaaaaattaatcaaaagaaaatatacaaaacCTCTGAACTTTGGTGGTggtaaaaagcaaagaaaaagcgTTTGTAAAAGAGAATATTCTAATGAACAATTAAATGCTGCTTTAAAAGATATTCAAGCTGGATGCACACTGATCGAAGCATCTATAAAAAATCAGATTCCTAGATCTACGCTTTACATGAGAGTAAAATCTTTAAATCTACCATTAAATACTTCTAGAACTGACTATACAAATACAGATATGAGAGCAGCAATAGAAACAGTTGTTGCTGGATCTAGTTTACAACAAGCTTCTGATTGTTTTGGAATCCCAAAAACAGTTTTATGGAGAAGAATACAAAAAGAAggcattgaaataaaaaataagcgcCGCAAAAAAAATGCTTATGGTGGAGAAAGGAGATTAGCTGCAGTGAAAGCTTTAGAAAGAGGAGATTCTTTAACTAAAGTTTCTAATGAATATaagATTCCAAAAACAACGCTATTTCGAGATAAAACTCGTTTAATAAATCAAGGAAAATTGCCAGCATCATTCTGGAAAAGACGTAAATCTGAAGGAGACGACGAAAAACGATGTCGATTagaagaagcagtagcagcatgtAAAGATGGTTTAATGTCTCAAGCAGCAGCTTCAGCAACTTATCAAATACCAAAAACAACTATATGGCGTCGACTCCAAAAAGAAGTACCTAAAACAGGTTCACGGTCtatatcaccaaaaaaaaaagtttttaaacaaacaaaaacagcACCACCTAAATCAGATGAATTAAATGAAGATGATTTTGAAGCATATTGTCCGgAAGAAgctgaaataaatataacatacaTTGATGAAGATAATATATCTAATGATCCTGTAATAATTCTTGGTAATGAAGATGCTGAAGAGTCTAATAGAGAATCTTATGTTGTTGTGCAAGaagGTTCACCTgaagataattttatatcattagaTTATGATAATAATTCATCATATGCTAACAaaagttaa
- Protein Sequence
- MDEGDESDMLMTTITSDAGDKSHNIKCANYRHQIFEVVRQLLAEESMVDLTLCVGGERISAHRVVMSNCSSLFKEILCKVNEEHTTILLPGIEAQYVRAIIEFCYNGEIRIPYEDIESFLEASHFLKIEGLKDIAGIVESDNLNDKEELEEYVLEDIDTIVDSDDNIEDSSEEIVDRSSNNSSPKKLIKRKYTKPLNFGGGKKQRKSVCKREYSNEQLNAALKDIQAGCTLIEASIKNQIPRSTLYMRVKSLNLPLNTSRTDYTNTDMRAAIETVVAGSSLQQASDCFGIPKTVLWRRIQKEGIEIKNKRRKKNAYGGERRLAAVKALERGDSLTKVSNEYKIPKTTLFRDKTRLINQGKLPASFWKRRKSEGDDEKRCRLEEAVAACKDGLMSQAAASATYQIPKTTIWRRLQKEVPKTGSRSISPKKKVFKQTKTAPPKSDELNEDDFEAYCPEEAEINITYIDEDNISNDPVIILGNEDAEESNRESYVVVQEGSPEDNFISLDYDNNSSYANKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00878197;
- 90% Identity
- iTF_00878197;
- 80% Identity
- iTF_00878197;