Labn006325.1
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- -
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010001603.1:1-15578[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-12 3.3e-09 37.6 0.0 1 39 392 431 392 435 0.90 2 4 1.2e-11 2.7e-08 34.7 0.0 2 39 447 484 446 487 0.94 3 4 1e-18 2.3e-15 57.3 0.0 1 45 501 546 501 546 0.97 4 4 5.3e-18 1.2e-14 55.0 0.0 1 42 553 595 553 596 0.97
Sequence Information
- Coding Sequence
- TCTCTATTAAAAACAGCAGaccaattaaaaatcaaagGCTTATGCGAAGTACCAGAAAGTCGCGAAGGACCATCAGTGAGTTTAAGCTCACCACCACGTGATTCAAGTACACcaagattaaattttagtaaattaaagcGGCATCATCATCCGCGTTATAAGAGGCCGCGTACGTCCTTTGACGTTAGCGGCGGACGTTTAAACAACACAACGGAGACCAgacataacaataataataataatcatttacaTCATCAACAATCGctacatcatcatcaccatcatcatcttAATCATCATTTACACGATCCTACATCGAAGTATAAGGAAGAAGATTTTGTTGAAAGTTACGTACGCGATTGTGACAAAGagAACCGTCGAGATTGTTGGCCTGCTGAAGATGAGGATTGCATGGAGACGACAGTAAGCGGAGTAGTAAGCCCAGCAGTTATCCTGGACACCTGTCAGCGAAGTAGTAGCAGCACCAccggaggtggtggtggtggcagcggAGCTGGAGGTGGTACCGGTGGAGGTACCGGTAGTCGTACCGGAGGTGGAGGTAATAACAGTAGAACTGGAGCAAATCAAGAAAATACTGGTACCAacacaacgacaacgacaacgtcgtcaacaacaacaacagttacggaaaataataatagtcaCAGCGGTGCAGCAAACAACAGCAACGGTGCATCAGCTGGGAGCAACAACGGACAGCCTACCGCGGCAAGCGGCCCTAACAACAACGGCGATATGTTCTGTCATACCGGTTCATTAGGCCACTACGGCCATCATCCTGATCCTGCTGAAGTTGATTTACCGCCTGAGACACAACCTACCCCACCAAGTGCTACCCTTGTTGGTACTACTATTACTCATCTTAGAGATACCGATCACCATACTGCTGatatTCAGAGCTGCGACAGtgtaaagataaaatttgagACACTACACACAATGGATTCTTCAGACACAATTGATATTGACAGTCATATGTCAGACAGAGCTAGCGTTAGCTCAAAAAATGCTGATGacaatatgatgatgataacaCCTGAATTACTTGGTCTTATGCCATCTGGTAGTTCTGTACATTCTGACTCTGGTGAAAATAATTCACGTAGTCATTCTGGACAATCTGGACATCATCATGGTTCGAAATCTTGGACGCAAGAGGATATGGATGCTGCGCTTGAGGCTTTAAGAAATCATGATATGAGTCTTACTAAAGCTTCGGCAACCTTTGGCATCCCTTCAACGACATTATGGCAACGAGCACATCGTCTCGGGATTGATACGCCAAAAAAAGACGGTCCAACAAAATCCTGGAGCGACGAGAGTCTCAATAACGCGCTGGACGCGCTACGTACTGGTACAATATCAGCAAACAAAGCATCTAAAGCTTTTGGAATACCTTCAAGCACACTTTACAAGATAGCACGTCGCGAGGGTATAAGATTAGCAGCACCATTTAACGCAAGTCCAACCACATGGACACCCGCTGATCTTGATCGTGCACTCGAGGCAATAAGGTCAGGACAGACGTCGGTGCAGAGAGCTTCGACCGAATTTGGTATACCTACGGGTACGCTTTATGGACGCTGCAAGCGTGAAGGTATCGAGCTTAGCCGCAGCAATCCGACGCCATGGAGCGAGGATGCGATGACCGAGGCACTTGAGTCTGTAAGACTAGGTCACATGAGTATAAACCAGGCCGCGATACATTATAATTTGCCCTACTCGTCGCTGTATGGTCGCTTCAAGCGCGGCAAGTATGAGGAGCCAGTGGTCAACGAGATGTCGCAGGACGGCTCGTCTCAACACTTCCATCAGAGCTCAACAACCAACAACCACTCGTCCTCCCTTCCCGACCAAATGCCTTATCAGGGCAGCTGA
- Protein Sequence
- SLLKTADQLKIKGLCEVPESREGPSVSLSSPPRDSSTPRLNFSKLKRHHHPRYKRPRTSFDVSGGRLNNTTETRHNNNNNNHLHHQQSLHHHHHHHLNHHLHDPTSKYKEEDFVESYVRDCDKENRRDCWPAEDEDCMETTVSGVVSPAVILDTCQRSSSSTTGGGGGGSGAGGGTGGGTGSRTGGGGNNSRTGANQENTGTNTTTTTTSSTTTTVTENNNSHSGAANNSNGASAGSNNGQPTAASGPNNNGDMFCHTGSLGHYGHHPDPAEVDLPPETQPTPPSATLVGTTITHLRDTDHHTADIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFHQSSTTNNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -