Lcyl001811.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptogaster cylindrica
Gene Symbol
stc
Assembly
GCA_963082835.1
Location
OY720105.1:7963870-7967024[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.9 2.7e+04 -4.0 1.6 15 19 315 319 314 319 0.81
2 14 0.066 9.8e+02 0.6 0.5 4 10 348 354 347 356 0.95
3 14 9.2e-05 1.4 9.7 16.7 3 19 361 377 354 377 0.82
4 14 7.9e-07 0.012 16.4 12.7 3 18 415 430 413 431 0.92
5 14 2 3e+04 -4.3 1.2 7 11 435 439 432 439 0.78
6 14 7.3e-10 1.1e-05 26.0 13.5 1 19 471 489 471 489 0.98
7 14 4.9e-06 0.072 13.8 12.0 4 19 537 552 530 552 0.88
8 14 0.0039 58 4.5 9.0 1 11 592 602 592 603 0.96
9 14 3.8e-10 5.6e-06 27.0 14.5 1 18 619 636 619 637 0.99
10 14 0.6 8.9e+03 -2.4 1.0 6 10 666 670 665 672 0.78
11 14 2 3e+04 -8.8 11.0 10 18 684 693 673 694 0.75
12 14 3.8e-05 0.56 11.0 16.2 1 16 730 745 720 755 0.84
13 14 2.6e-07 0.0039 17.9 12.1 1 16 762 776 762 781 0.91
14 14 1.2 1.7e+04 -3.4 1.8 7 12 796 801 790 801 0.62

Sequence Information

Coding Sequence
ATGTCCGAATCGCAAGATAAAGTGGACACTGAAAGGGAGAAAAGTGACACGAACTCCAGTGCGAACGACTACGTtgatttcaatcaatttttgcTGCAACATCAACTCACTGGACAGATGACCCGGAACTTCTTCGATTACTACACGAGCCCTGTGCCTTTTACGTCTAACTTCGCTTATGACAGCTTTGTAGAAGCAGATGCATACAGAAGCGATCTGGTGTCTTCGTCGAATTTAGTACCAACTGCGGCTGAATTTATTCCACAAAGATTCAACAATTTAAGCTTGGTGCAACCAAATTTTACATCTGCTCCTGCAATGAGGAGAAATCACGAAACGAATGGCACGGAGGCGGTATTGAATGCGGAACAGGAAGGCTCCAGCCCAAATCGTTATCATAATTCAACAGGAGCCATAAGCAAGAATCAAGAGCAAAAGAGCCGCAATCGAAACAAAGATTTTGAGGGTCAGGGAAGAACAGAAGGACGGTACACACAGAGCGGGGCGCACTTAAATAGACACAAGTATCAACAAGAAAACGGGTATTACAACAACAGAAACAAGCAAAATTATGagaatatttcaaagaaaaggGAGAACGCTTGGCGCAACAACCGGGAATCGTTCGAAAACAAATTCTCGGACAGGCGAGAGAACAGCGATTCCGATGGGTCCCTCGAAAAACAACGTTACAATAAATCTAGTAACTCACTGAAAGGGTCTTCCACTCACACGTTCGACGAAGAAAAGAGCAACGAAAAGTTGTCTCAGCGGGAAAAATTAATCCGCGAAATAGAAGCGCGCAAACTGGAATGCTTAGTCTGCGTCGAGCAAATCAAGGGTCATCAGTCGGTGTGGTCGTGCAGCAATTGCTTCCATATACTCCATCTGACTTGTGTCATTAAGTGGGCTTGCAGCTCCAAATCGGACGAAGGCTGGCGATGCCCCGCATGTCAGAACACCACCAAGACGGTACCCAAGGACTACTACTGTTTCTGCGGATCGGTGAAGAATCCCCAGTATAACAGGAATGATGTTGCGCATAGTTGTGGAGAGGTTTGCGGACGAAAGGACCATTGCCAGCATCCCTGCACACTTCTGTGCCACCCTGGACCATGTCCCTTGTGCCAAGCGATTGTGTCGCGGAACTGTGGCTGTGGAAAGATATCAAGAGAAATGCAATGCTCCTTCAAGGAGGAACTGTTTTGTGGGGATGTTTGTGAGAAGCTGCTGAACTGTGAGCTACACACGTGCGAGAGCAAATGTCACCAGGGAAAGTGTCCAACTTGTGTGCACAAGGTCACTCAGAAGTGCCACTGCGACAAACAGGAGCGACAGGTGTTCTGCACTCGTGACTCAAACGAAAAGAAGAATTTCTCCTGTGGGAAGCTTTGCGCAAAGCCTCTTGACTGCGGATCGCATAAGTGCAAGGACGTGTGCCACACTGGGGACTGTAAGCCATGCAAGTTGTCTCCCGAAGTGGTTCGATCATGCCCCTGTGGCAAAATGCCGATCGCTGCTGGCGATCGAAAATCGTGCCTGGACCCGATTCCTCAGTGCGACGGCATTTGCGGGAAAGTTTTGAAGTGCGGCCCACCAGCTTTCCCACACAACTGCGTGAGCAAGTGCCACTTGGGAAATTGCCCGCCGTGCACCAAGCAAACAGCGGTGAAGTGTCGTTGTGGTCACATGGACCAAATGATCAAGTGCCGGCAGTTATCCTCCCGAGCCGATGACGCCCGCTGCAAGAAGCGCTGTACGAAGAAGAGAAGCTGTGGACGCCACAAATGCAATCAGGAATGTTGCATCGATATCGATCATATCTGTCCCCTGACCTGCAACTACAATTTGTCCTGTGGCAAGCACAAATGTGACCAGCCCTGCCACCGTGGCAATTGTCCGCCGTGTTTCAGGAGCTCCTTTGAAGAGTTGTACTGTGAATGTGGTGCCAATGTAATTTACCCGCCAGTACCGTGCGGCACCAAACGCCCGCCCTGCGAAAAGCCGTGCTCCCGACAACATCCGTGCGACCATCCCGTGCAGCACAATTGCCACTCGGCGACAACTTGTCCGCCTTGCATGATTTTCACCACTAAATACTGCTACAAACGCCACGAGCAACGAAAGACGATTCCGTGCAGCCAGACCAGTTTCAGCTGCGGACTTCCTTGTGGCGAGGAACTGGCATGCCGCAGACACAAATGTATCAAGCCGTGTCACGATGGTCCATGCCAGGCGGAAGGCGACATTTGCAAGCAGCAATGCAAGAAATCTCGTGCAGCTTGTGGGCACAAATGCAACGCCCCATGTCACGATGGAGACTGTCCCGAAACTCTCTGTCGGGAAATGGTTGAGGTTACTTGTGAGTGCGGACATCGCAAGCAGCAGCGCGCATGCCACGACTTCTCGAGTGAATTTCGACGCATTGCAACTGCTCAGTTGGCGTCTTCCATGCAAGAAATGCAACGTGGCAATTTGGTTGAACTCAGCGACATCATGGGGCCCGTCAAAATGACCACTAATAAGACACTCGAATGCAACCAGGAGTGCAAGGTTATTGAGAGGAATAGACGTCTCGCTGTGGCCTTGCAGAGTCCAGATGTGCCTTCATCGAAAATTCTAACTCGATATTCTGACTACACGAAGAATTGGGCGAAAAAAGATCCGCAGCTGGTAAAAATGATCCACGATGCTCTTACTAAGCTTGTGAAACTTGCTAAAGAAAGTCCACAGAAGTCGCGGAGCCACTCATTTCCGACAATGAATCGGGAAAAGAGGAGCTTAGTACACGAAATGTGCAGCATGTTTGGTGTACAATCGGTCGCCTACGATGCGGAACCCAACAGAAATGTTATTGCGACTGCTTACAAAGATAAATGCTGGCTCCCCGCTATGAGCATAATGGAAGTGATGCAGCGCGAAAGCGGCCAGAGGAGAGTTCCTGTTCCAACCAACAATGCCTGGGGCTTGAAGAGGTAA
Protein Sequence
MSESQDKVDTEREKSDTNSSANDYVDFNQFLLQHQLTGQMTRNFFDYYTSPVPFTSNFAYDSFVEADAYRSDLVSSSNLVPTAAEFIPQRFNNLSLVQPNFTSAPAMRRNHETNGTEAVLNAEQEGSSPNRYHNSTGAISKNQEQKSRNRNKDFEGQGRTEGRYTQSGAHLNRHKYQQENGYYNNRNKQNYENISKKRENAWRNNRESFENKFSDRRENSDSDGSLEKQRYNKSSNSLKGSSTHTFDEEKSNEKLSQREKLIREIEARKLECLVCVEQIKGHQSVWSCSNCFHILHLTCVIKWACSSKSDEGWRCPACQNTTKTVPKDYYCFCGSVKNPQYNRNDVAHSCGEVCGRKDHCQHPCTLLCHPGPCPLCQAIVSRNCGCGKISREMQCSFKEELFCGDVCEKLLNCELHTCESKCHQGKCPTCVHKVTQKCHCDKQERQVFCTRDSNEKKNFSCGKLCAKPLDCGSHKCKDVCHTGDCKPCKLSPEVVRSCPCGKMPIAAGDRKSCLDPIPQCDGICGKVLKCGPPAFPHNCVSKCHLGNCPPCTKQTAVKCRCGHMDQMIKCRQLSSRADDARCKKRCTKKRSCGRHKCNQECCIDIDHICPLTCNYNLSCGKHKCDQPCHRGNCPPCFRSSFEELYCECGANVIYPPVPCGTKRPPCEKPCSRQHPCDHPVQHNCHSATTCPPCMIFTTKYCYKRHEQRKTIPCSQTSFSCGLPCGEELACRRHKCIKPCHDGPCQAEGDICKQQCKKSRAACGHKCNAPCHDGDCPETLCREMVEVTCECGHRKQQRACHDFSSEFRRIATAQLASSMQEMQRGNLVELSDIMGPVKMTTNKTLECNQECKVIERNRRLAVALQSPDVPSSKILTRYSDYTKNWAKKDPQLVKMIHDALTKLVKLAKESPQKSRSHSFPTMNREKRSLVHEMCSMFGVQSVAYDAEPNRNVIATAYKDKCWLPAMSIMEVMQRESGQRRVPVPTNNAWGLKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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