Lcyl012648.1
Basic Information
- Insect
- Leptogaster cylindrica
- Gene Symbol
- -
- Assembly
- GCA_963082835.1
- Location
- OY720106.1:37340437-37347320[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.11 13 7.2 1.3 1 23 889 912 889 912 0.94 2 13 2 2.3e+02 3.2 2.4 1 23 1007 1029 1007 1029 0.94 3 13 0.0036 0.42 11.9 5.0 2 23 1032 1053 1032 1053 0.97 4 13 0.00013 0.015 16.4 0.3 3 23 1061 1081 1059 1081 0.98 5 13 0.00016 0.018 16.1 8.4 2 23 1088 1110 1087 1110 0.96 6 13 2.7 3.2e+02 2.8 0.5 5 23 1123 1141 1120 1141 0.96 7 13 0.0068 0.79 11.0 4.2 3 23 1148 1169 1146 1169 0.95 8 13 0.011 1.3 10.3 0.3 2 23 1180 1200 1180 1200 0.97 9 13 5.5e-05 0.0063 17.6 0.8 1 19 1206 1224 1206 1228 0.95 10 13 0.00021 0.024 15.7 0.3 1 23 1236 1258 1236 1258 0.98 11 13 0.00025 0.029 15.5 7.2 1 23 1264 1286 1264 1287 0.96 12 13 0.003 0.35 12.1 4.0 3 23 1294 1314 1292 1314 0.98 13 13 0.0089 1 10.6 5.6 1 23 1320 1342 1320 1343 0.93
Sequence Information
- Coding Sequence
- ATGGGTGAACAAATTCCGTGCCCGGTGTGCACATTGTTTTTGCACCCTGGGATGACTCTTGAGGAGCACTTGGAAACTCATCCAAAGGATCAGGTCATAAAAGCTTTGGTAGCCCTTGCATCGGGACAGTCGATGTACCCGGCAACATCAGCAACACAGCTCGTGCATCACAGTGCTTCGTCCTTGGAAGCTAGACACAACACCGGCGTTATATCCTCCACTGAGTCAAAAATGGGATTCATAGCTCCAAGTCATCGCAATGTGATGATTTTCAACCGCCAAAGCACCATGGTGTACCACAGCACGGAGAGCGACCAGCGAATGCTTAGACAGCCGTTGCCATTGCCCCCTCCCGCGTTAGAGTTATATGATTCGTCGCGAAATGGGAAATTCTTTCAATCACCCACAAGTTATTGCACCTCGACGGATCACAATCGATCTCACAACATCCACGATTCAAACGATCGATCACAAAACAATCTACATTCTGAGTGTCCTTTCGAAGGCATATCAAATCAGCTCATAGATCCCCAAAGCAGAAAAACTCCTCAACTGCAGTTCTCATCGCGGACGTCATCCCCTAGACCAACACCATCGCCTTCAGTGCTTAGGTATGCTGAAAGTCCAATTACTGCGCATTACGTGGAGCGTGAAAATGGAGATTTTATAGTTCAAGAAACTCCTCGGCATGTGGTTGAATGTATTGAAAAAGACGATGGTGAATTTTCTGTCACAGAGAAAGTAATAAAATCTCCGCCTAGTGTTGTTCAGTTCACTGATGGGGAAAGCATTGATCCTACTGAATTGGATATTGCTAATAACGATAACAACAGTTGCGTTGACGGAGACCATGAGCCCTTTACTTTCAGGGAAGAACCACATATTTGTCAAGACGACGTTGCATCCACTGTAACAGTTTTAAGTAATGTAAAATTAGCGCCTAGAGAATCTTTagatttaatggaaaatataatggGATTAAGCTCAaaaccaccaggagtggaatTACTTTGGAATAGTTTGGTTGAACCAGATGCTTTCGAAGTAAAAcaggaaatagaaaacattggTATCACAAACGAGGGGAATTATGACAAAGATGACTTCGAGGAAGATATTTATGAGCATGCTGCtcaaaataaaagtagaaTTCAACCGTCATCTTCGGCTGCTACTAGTGTTATTCGGTTAGCAacaaacttgaaaaattccaCTATTAAAGACAATACTACGTCTAAAAATGTCGAGCGAAGTTCGAAGTCGtccaaacatgtttttcaacGCGAACAGGTTAAGCGCCCTTACAGAAAGATGCCAAAAAAGCTCGTGGTTAAATTCAAACAACCCCCAAGCATAAATGTCTGCGAGAATAACGATGAAAGTTGTTTGGCCAGCACTTCAAAGGACATAGAAAAAGCagtccaaaaaaattttaacatcaCAGACGCAGCAGCTGAAGTTACAGGTGCTGAGACTTTGGAAAaggaacaagaaaaaaatggaaCCACAGAAAACTTACTGGACAGAAGTACAGACGTTCCGGTACAAGATACTAGTGACAAAGAAGTGGAAAAAATGCAGACGAATGAATCTACGGAAAGCCATATCGAGAAAATCAATGATAAAGTACAGGAACCGTTGGAGAAAGAATCCACTTCCGTAATACTTCAGAGAACAGATTCTATTTCATTGGTTTCGAAAGATGAAGGTACCATGCGagaaaaagcaaaacacaATATGGATGTAGACGTAGATGATCCTAGGCTGCCTGTTGTCATTGTGCATGAACCATCCCTCTTAGATGAAATTcctttagaaaataataaagagaAAAACTTAGAACAAACACAGGAGACTGAAATGAAGGCtattgaatttacaaatatattagATGACTCGACCAAAGGTCATAAGCCAGATTCTTATACAATCCACTTGTCTACCATTAATTCTATTCCTGATTGTGCAGATGAATCCTCGCCAAATAGGATACAGAAAACAGCAAATAATGATTCGGAATTGCAAAGAGATTTTTCAGGAATGTCGAATTCCTTTCCTTCAACTTCTTTCTCAAAACCTAGTTCCTTTGGATCACGTGAACAGACTGATTTCCACAGTTGTCATAGTTTTACCGATTATCCATTTAGTTTTATGTACACAAATAAGGCCGAGAAGGCATGCTTATCACCAGCATACCCATCTGAGGAGCAATCATGGCACAAGTTAGCTACGCCGCCGTTCCAGCCACATCCTTATGTTCAATCCACTGATGTGGATACTGAGAGGAATAGTTATTTGGACTTAGATGCTTGCAAGAAGAACATCAATACTGATACAGTTCCTTCGGTTGATACCTTTAACATACACACAGACGAGAAAATGCCAGCGAAGGGCGAAATTTCCGAGCAGGAAAGTAATGGTGAAATTGATCTTTCATGGGGCCAAAccTTTTGCAACGACAGTCAacgttttcaaaatcaaatggaaaattatggAACTCAAGAAAGTGGAAGTTACAGCaatgacaattttttcttttgtccCCAAAACTTAACGACCGATACTAAAGCATTTAGAACTGCCGAAAATTCGAAAGCCGAAGAAACCGCAAATATTAGACTGCCAAGATTGAAAGGGAAGAAAACCACATCAAACCGAAAAACATTTCGATGTGATCATTGTCCTTCCGTATTTCCTAAATTGAAAGAAAGGAACTCGCATTTAATTCAACAACACAACTACAAAAGAGTGAACCGGCGACTGATTCGTGATTTTCCTCCAGCAACAATAACTACTGGTCAAATAGAAGAAATTTCGTCGGCGACATGTGTCGACAGTTCAGACgtgaaaaaaacagaaatgtcGGCATTGACAACGGTGGAGGTCACTCATTTGCCTCGCACTAAATATGATTCACTTCGGGCAGGAGTCTACCGCATGCTGATGAACTTCAATCTGAGCGTGCTGcagcaaaagaaaaatgtggaTGTTGACAAGGCACTGTTTGATTCGAAATCTTTTTGTTGCTACACCTGTAAAAGAGACTTTATAAGTGTAAAGTCTTTTGATGAACACCTAGCAGAACATCCAGCCGAGTGTTTCACatgcagtaaaaaattttgtcggTGGACATATTTGTCTTTACATCTCAAACGACACTTAGGTTGGAAAGATTTTGGTTGTACCGTCTGCAGtaagaaatttgtaattagaAGTGCACTAATCGAGCATATGCGAATGCATACGGGCATCGCTCCgctgaaatgcaaattttgcgATAAACACTTTAAGAGATACTCCAATTTAACCCAACACAAACGTGTGTGCCACCAAAcgaaaaataagaagaaaaaggaTTATGTTTGTCACTGCGGTGAAGTACTACCTTCAAAAGCACGTTTTTTCTGGCACAAGGAAACACATGATACGAAACCAAAGTGTTGTCCTTATTGCCGAGATAGATTTGTGCATTCAAATAGCCTACGACGTCATATTCGATTAGCTCATTCGGATAAATTTTGTTACGCTGAACCTGCGGAATGTTCGGTGTGTAATCAGGTGTATGCCAAAACTAGTCTAAAAGCGCACATGAGCACCCATTCAATGGACACTCAGCACGAATGTATGATTTGCAATAAGTCATTTAGCACCAAATGGAATTTAAAGATCCACAGTTGGGTACATGCCAACAGAACTGCGAAACCCTTTAAATGCGACTTGTGCGTTAAGGCATTTGTGCGGGAAATAGATTACAAGAATCATATGAACGCTCACAAGCAAATTAAACCATACACCTGTGAGTATTGTGGATGCaaatttataaggaaatacaACTATATGCGCCATAGTCGAGAGCATCACGGTCAAAAAAAGTTTGGTTGTGATTTATGCggtaaattatttcatagGCACTACTATTTGATAGAGCACAGACGAACGCACACTGGGGAGCGGCCATTTCTATGTACAATTTGTGGAAAaagttcaacaacaaaaacaaatcataacaaacatttgaaaattcatcattCTCGTGATCCCTTCACAACAGAAACGTAA
- Protein Sequence
- MGEQIPCPVCTLFLHPGMTLEEHLETHPKDQVIKALVALASGQSMYPATSATQLVHHSASSLEARHNTGVISSTESKMGFIAPSHRNVMIFNRQSTMVYHSTESDQRMLRQPLPLPPPALELYDSSRNGKFFQSPTSYCTSTDHNRSHNIHDSNDRSQNNLHSECPFEGISNQLIDPQSRKTPQLQFSSRTSSPRPTPSPSVLRYAESPITAHYVERENGDFIVQETPRHVVECIEKDDGEFSVTEKVIKSPPSVVQFTDGESIDPTELDIANNDNNSCVDGDHEPFTFREEPHICQDDVASTVTVLSNVKLAPRESLDLMENIMGLSSKPPGVELLWNSLVEPDAFEVKQEIENIGITNEGNYDKDDFEEDIYEHAAQNKSRIQPSSSAATSVIRLATNLKNSTIKDNTTSKNVERSSKSSKHVFQREQVKRPYRKMPKKLVVKFKQPPSINVCENNDESCLASTSKDIEKAVQKNFNITDAAAEVTGAETLEKEQEKNGTTENLLDRSTDVPVQDTSDKEVEKMQTNESTESHIEKINDKVQEPLEKESTSVILQRTDSISLVSKDEGTMREKAKHNMDVDVDDPRLPVVIVHEPSLLDEIPLENNKEKNLEQTQETEMKAIEFTNILDDSTKGHKPDSYTIHLSTINSIPDCADESSPNRIQKTANNDSELQRDFSGMSNSFPSTSFSKPSSFGSREQTDFHSCHSFTDYPFSFMYTNKAEKACLSPAYPSEEQSWHKLATPPFQPHPYVQSTDVDTERNSYLDLDACKKNINTDTVPSVDTFNIHTDEKMPAKGEISEQESNGEIDLSWGQTFCNDSQRFQNQMENYGTQESGSYSNDNFFFCPQNLTTDTKAFRTAENSKAEETANIRLPRLKGKKTTSNRKTFRCDHCPSVFPKLKERNSHLIQQHNYKRVNRRLIRDFPPATITTGQIEEISSATCVDSSDVKKTEMSALTTVEVTHLPRTKYDSLRAGVYRMLMNFNLSVLQQKKNVDVDKALFDSKSFCCYTCKRDFISVKSFDEHLAEHPAECFTCSKKFCRWTYLSLHLKRHLGWKDFGCTVCSKKFVIRSALIEHMRMHTGIAPLKCKFCDKHFKRYSNLTQHKRVCHQTKNKKKKDYVCHCGEVLPSKARFFWHKETHDTKPKCCPYCRDRFVHSNSLRRHIRLAHSDKFCYAEPAECSVCNQVYAKTSLKAHMSTHSMDTQHECMICNKSFSTKWNLKIHSWVHANRTAKPFKCDLCVKAFVREIDYKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHSREHHGQKKFGCDLCGKLFHRHYYLIEHRRTHTGERPFLCTICGKSSTTKTNHNKHLKIHHSRDPFTTET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -