Lcyl009811.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptogaster cylindrica
Gene Symbol
-
Assembly
GCA_963082835.1
Location
OY720106.1:13450495-13459300[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.025 2.9 9.2 5.1 2 19 121 138 120 141 0.93
2 16 0.24 27 6.2 3.3 2 23 152 173 151 173 0.90
3 16 0.054 6.2 8.2 0.0 3 20 182 199 181 200 0.94
4 16 0.00098 0.11 13.7 0.9 1 23 224 247 224 247 0.95
5 16 2.2e-05 0.0025 18.9 0.8 1 23 252 274 252 274 0.98
6 16 0.0091 1 10.6 2.1 1 23 322 344 322 344 0.98
7 16 0.0024 0.28 12.4 1.9 1 23 349 371 349 371 0.98
8 16 0.26 30 6.0 0.8 1 23 387 412 387 412 0.95
9 16 0.065 7.5 7.9 2.4 1 23 417 440 417 440 0.97
10 16 0.015 1.7 9.9 1.4 1 23 445 468 445 468 0.96
11 16 4.5e-05 0.0051 17.9 2.7 1 23 473 496 473 496 0.97
12 16 1.6e-05 0.0019 19.3 1.0 1 23 499 522 499 522 0.98
13 16 1.1 1.3e+02 4.0 4.8 1 23 528 551 528 551 0.93
14 16 0.41 48 5.4 2.7 1 23 557 579 557 579 0.98
15 16 1.2e-05 0.0013 19.7 1.4 1 23 585 607 585 607 0.99
16 16 0.0046 0.53 11.5 0.1 1 23 613 638 613 638 0.96

Sequence Information

Coding Sequence
atgaacgaagaACAAGGCACAGATGGCGATTCAGATCCTGATAATCATGAAATCTACCGAAACATTGACTCATTGGAGGAACATGATCAAGAAATTGATCTTATCGAgtacaaaacaaaagtattaCGAAGTAAATTCATGGATCTTATGTTCCCACATGAAATAAATTGCCGCTTGTGCTCTCAAGGACTAGAACAGCACGCGGATATTATAATGCACACAACTGAGATGCATTGCGTAGAGGAGAATGCATATCCTTGCATTATTGATAATAACTGCGATACTTTTAAAAGTTCAACAGCATTGAGCtttcatttcgtttttaagCACTACGATTTGGAATCattAACAATTTATTCGCAATGTTGCGAATGTGATAAGACATTTACCGATTTTGCGTCGTACAATAAACACTCGTGCTACAAAGGAGAGAAGTTGTCTCGAAGCTTGACAGAGTGCGGCATTTGTAAAAGgacatttaaatcaaataaaagGTATCGGTTCCATCAGCAATTCCACCTAAATAAACGTCGTCCTAAAGCTTGCATGATTTGCGATATCATGTTCAGAGATGAAGACGAGTTCTACGAGCATATTATATGTGATCGAGTatttttaacagaaaaaaacttgaaatttcaTGAGGGTATACACAATGTAGATCGTAAATTTTTCTGCGATCTCTGCAACAAATCTTATTTCTACAACCAACTATTAAAGGATCATATTATATCTGTTCATGGGAAAAGAACATATGAATGTCACATAtgtggaaaaatattaattaagagaACATTACtgaataaacatattttgtctCATTCCAAACCAAAACCgacttcaattaaaagttgcAGCAAATGCGGATTCATTGCCGACGATGATAAACTTGCAAACaaacatGTTGAGGAATACCATGGTGTGGATGACGCAGAACTTCTAcagaaaatacttgaaattagCTATTGCTGTGAATATTGCGAAATGGCCTACGATTCTCTCGAAAATATGTTTACTCATAGAAACTCGCATGAGAGAAAGGatttttattgtgatttatGTCCTTTAAGTTACGATCAATACAAAAAGCTGAAGACACACAAATTGACTCATGCAGATTACGTGGATAAGCGGAAGACTTTTCCAGTTATGCGTCATTACGTTTGTGATATCCCTGGTTGTACAGCGAGTTATCTTCAATGGACTAGTTTGAAATCACACAAGAGGCACAAACATGATAACAAGGAACACAAATGTCCGAAATGCATGCAAAGCTTTTATGATGATAATATGTACAGAGTTCACTTAAAGAGTGAGCACAATGGCGATGCTTTTGAGTGCCACTTCTGTATAAAAAGATTTGCTACAAAAATGGCCCTGGCTGTGCACACCGCAAGAAAGCACAATACTAatCGTTTTCAATGCTCGTTTTGCAACACAAGTTACGCGACTCAGGACCATTTGGATAAGCATATTAATTCtacacacaaaattttcacttgCGAAGAATGTGGGAAAGTGTTGAAGAACTATAAAAACTATCAGGTCCATAAAAGGATGGTTCATTTGCAGGAAAAGAGGTTTTTCTGCAAATACTGCAAAAAGGGATACTTTAATAATTGCGATAAAACTGATCATGAGCAATCTGTGCACGAGaaacttcaaaggttcaagtGCGATTTATGTCCGCACACTGCTATTTACAAGGAATCGCATATAATACATATgcgaaaacataaaaatgaaacaccCTATGTCTGTACCCTGTGTAGCAAAGGATTTCGACGACGCTACGGACTGGAATTACATACAAGACGacattatcaaattaaaaaCTTCAAATGTCCCTACGAAGATTGCGGTTTATCCTATCCCAATAAAGGGATTTTGAACTCTCACGTTCGCGCAAAACATGCAGTAAATGCCTCCTCTAAAAGACCAACTAGGAAAAGGAAATCTCTGGCAGACTTTCGATTTCGTGACAATGTTCCATCAACAGATACTTttattgatgatgatgacggaTTAGATGATGGGGTTATTGGTGAGCCGATAAACGATGAAAATGAGTGCGTCGTAAGAGAAAATCCAGATAGCTGCGTGACATATGCAACTGCCGAACGTCCCGCAGTAATTGTGCAAAAGAATGAAAGTGATCACGATTATAACGTGAAAATCGATGACGACAGAATTTATGGAAATGTTATTGAAGAGCTCGAAGCCACACCAAAAATTGAAGTACAAGCAGCGGTGCTCGACTCTCTAACCGATTTCCTTCCTCCCAGAAAGGCATGCGTTCCCCAATTGCAACTTCTCCAAGGCCTAACCCTCGTCGATCCATGGTTCGATCATCCAGGTAAGATCGATCTGGTCTTAGGAGCTGATATTTACGCAGCGATTCTGGAAGAAGGCCTGATTCAAGGTAAGAAAGGCACCCCCGCAGCCCAAAGGACCTCTCTTGGCTGGATCATCTTCGGAGAAATTTCACATCCCTCGCCCCCTTCAGTCTCCATTTCATGCTCAAGAGATAGCCCCCAAAACGTTTTCCACAATTTCTGTTCTCAGGTAACGGAGTGCGACTCAATTACCCGGTTTTGGGAAATTGAAGACATCGCAAGTGATCAGCATCAAATGAGTCACGAGGATGCACAATGCGAAAACTTTTTCACTGAATCTCATTCAAGGAATCCAGATGGGAGATACATCGTGCGCTTATACGgcgtttacactggagattaa
Protein Sequence
MNEEQGTDGDSDPDNHEIYRNIDSLEEHDQEIDLIEYKTKVLRSKFMDLMFPHEINCRLCSQGLEQHADIIMHTTEMHCVEENAYPCIIDNNCDTFKSSTALSFHFVFKHYDLESLTIYSQCCECDKTFTDFASYNKHSCYKGEKLSRSLTECGICKRTFKSNKRYRFHQQFHLNKRRPKACMICDIMFRDEDEFYEHIICDRVFLTEKNLKFHEGIHNVDRKFFCDLCNKSYFYNQLLKDHIISVHGKRTYECHICGKILIKRTLLNKHILSHSKPKPTSIKSCSKCGFIADDDKLANKHVEEYHGVDDAELLQKILEISYCCEYCEMAYDSLENMFTHRNSHERKDFYCDLCPLSYDQYKKLKTHKLTHADYVDKRKTFPVMRHYVCDIPGCTASYLQWTSLKSHKRHKHDNKEHKCPKCMQSFYDDNMYRVHLKSEHNGDAFECHFCIKRFATKMALAVHTARKHNTNRFQCSFCNTSYATQDHLDKHINSTHKIFTCEECGKVLKNYKNYQVHKRMVHLQEKRFFCKYCKKGYFNNCDKTDHEQSVHEKLQRFKCDLCPHTAIYKESHIIHMRKHKNETPYVCTLCSKGFRRRYGLELHTRRHYQIKNFKCPYEDCGLSYPNKGILNSHVRAKHAVNASSKRPTRKRKSLADFRFRDNVPSTDTFIDDDDGLDDGVIGEPINDENECVVRENPDSCVTYATAERPAVIVQKNESDHDYNVKIDDDRIYGNVIEELEATPKIEVQAAVLDSLTDFLPPRKACVPQLQLLQGLTLVDPWFDHPGKIDLVLGADIYAAILEEGLIQGKKGTPAAQRTSLGWIIFGEISHPSPPSVSISCSRDSPQNVFHNFCSQVTECDSITRFWEIEDIASDQHQMSHEDAQCENFFTESHSRNPDGRYIVRLYGVYTGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-