Basic Information

Insect: Leptogaster cylindrica
Gene Symbol: salm
Assembly: GCA_963082835.1
Location: OY720105.1:19030137-19046091[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.1e-06 0.00013 22.9 1.0 1 23 382 404 382 404 0.98

2 9 9.9e-05 0.011 16.8 2.0 1 23 410 432 410 432 0.98

3 9 0.85 99 4.4 1.9 2 23 665 686 665 686 0.93

4 9 3.1e-07 3.6e-05 24.7 1.6 1 23 692 714 692 714 0.99

5 9 1.3e-05 0.0015 19.6 0.8 2 23 725 746 724 746 0.98

6 9 0.012 1.4 10.2 3.9 2 23 906 927 905 927 0.97

7 9 2e-07 2.3e-05 25.3 1.3 1 23 933 955 933 955 0.99

8 9 2.7e-06 0.00032 21.7 2.4 3 23 1094 1114 1092 1114 0.96

9 9 1.9e-07 2.1e-05 25.4 0.8 1 23 1120 1142 1120 1142 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.1e-06	0.00013	22.9	1.0	1	23	382	404	382	404	0.98
2	9	9.9e-05	0.011	16.8	2.0	1	23	410	432	410	432	0.98
3	9	0.85	99	4.4	1.9	2	23	665	686	665	686	0.93
4	9	3.1e-07	3.6e-05	24.7	1.6	1	23	692	714	692	714	0.99
5	9	1.3e-05	0.0015	19.6	0.8	2	23	725	746	724	746	0.98
6	9	0.012	1.4	10.2	3.9	2	23	906	927	905	927	0.97
7	9	2e-07	2.3e-05	25.3	1.3	1	23	933	955	933	955	0.99
8	9	2.7e-06	0.00032	21.7	2.4	3	23	1094	1114	1092	1114	0.96
9	9	1.9e-07	2.1e-05	25.4	0.8	1	23	1120	1142	1120	1142	0.98

Sequence Information

Coding Sequence: ATGATTACAGCCGCCGCCGGATCAGAACCCAGCTCACGATACTTGGAAGACCCGACAGCGGCTGGAGAGCAGGAGAAATGGCTCGACTCAACTGTGCTACACACACTTGCGACCGAGCTAAGTAAATTTGATGATCCTCAAACCAGAAGTGACATCATGTGCTCTGAAGAGAGGGACAAGGGCGAGTCCAGTTCGAGTTACGACGAGGACGAGGACGACGAGTCAACTGATCGCAACATACCGTATTACAAAAGACATTTgcttaataaatttgtattaaaaagtGAGATCGCCGATCGAAATAATAACAGCGGAAATCGCGAAGAGGATTGTGATTATAAGTTCAATGACAATAGGGCATTGGATTTGTCCAAAGTTCCGTCGTATCGTGTACCTTCGAGTCACGTTACTCTGGAGGCTCTGCAGAACACGAAAGTGGCTGTAGCTCAATTCGCTGCTACTGCAATTGCCAACACATCTAATTACGAGGACGCGATTAAGGACTTGGCTGTTGTACAGTCAACATTGTTCAACTTGCAGCATCAGCAGCTGCTACAGATTCAACTCATCCAACAATTGCAGTCACAGTTATCTGTGCATCAAGTGGACAACAAGGACAACTTAGATGAGAGTGAAGAGAGTAATGCTGTGAGAGAAAGTGGTAAGGATGAGGAGAGCTGGAAAAAGAAAGAAACTGCAGAGGAAGATAAATGTACCGTGGAGGTAAAGTTACTTTTAGAAGAAAAGTTACCCATAGAAGAAAAGTTACCCGTAGAGGAAAAGTTACCCGAGGAGAACACAAACGAAAATGAAACCAATTCCCAACTGAAAATTGAGAACCAACACAACAACAGTGTAAATGAAGTAAAGGATGAAATTAAAGCGCCGCAAAAGCCCGCGGACTTATCCTTACAATCTCCGCTTTGTAATATAAATTCTTCTCTTGCCTTTAGTATTATAACAAATCACGATCCCCCACCGCCTCCCGACGAGCCAAATTCTCTGGAGATGCTTCAAAAACGAACACAGGAGGTTTTGGATTCTGCTTCGCAAAGTCTGCTTGGTAACAATTTGGCCGATGAATTCGCTTTCGGAAAGGATCGGTCTGCGGATGGAAAAGGCAGAAACGAACCGTTTTTCAAGCATAGGTGCAAGTACTGCGGAAAAGTCTTCGGCTCCGATTCGGCGCTACAGATACATATCCGATCGCACACTGGCGAGCGTCCGTTCAAGTGCAACGTGTGCGCAAGCAAATTTACCACAAAAGGGAATCTGAAAGTACACTACCAACGCCATACCCAGAAGTATCCAACACCGCCCCTTGGGCCCAATTGCATTCCAGAATATCCGAACAATTTCCATCCCAAGTTCATGTCGCCCCTTACACCTCCGCAACTGGGTCATTTTTCTGCACCGAAGCATCCAAGTTCCGCTGGGGAGCTTCCCTTCCCTCCAGGGCCACCGTTCCTTCCGTTAGTGCCATTTCGATCACCAATGCATAATATGATGAGGCCACACGGGATTCCCCATCCTTGCCCTTCACCACCGATTCTAGACCAGGAAGAACCTGCCGATTTGAGTATTCCGCTGAAATCACACAACTCCAACAGGAAAGAAATTGAGGCAGAAACTTCAAAGTTTTGCAAGGAAGATGCTTCAAAACCTTCGAAAAGGATCTCCTTAAAACCAATACTACAAAACATTCCAAAGGAAGAAGACACAAAGCCGATGAGTACTTATTCCCAATATTCTGGAGACAGTGACGACAGTGATCAGGAGCAAcctgaaaatttatcaaaaaggTCGTCTGTAAGTCGAAATTCGAGCTTGTCCGACTCCACCCCGGAAAACGCGAAGTCGATGGGATGGTCGCAGGGTTGCGACAATGGGGACACCTCTTGGGAGAGTTGGatagaaattgataaaatgtCAGAGACATCGAAGTTGCAGGAACTTGTAGACaacattgaaaataagatCACGGATCCGAACCAATGTCCTTTCTGTCAAAGGTACATGGCCTGCAGGAGTGCATTGCAGATGCACATTCGCACGCACACAGGTGAGAGGCCTTATCGCTGCAAGATCTGCAGCCGGGCCTTTGCCACCAAAGGCAACCTCAAGGCTCACATGTGCATACATAAGATCAAACCACCAGTGAGAAGCCAAATGAAGTGTCCTGTATGTCATCAGAGATATCCCAACTCTTCTGCACTTCAGATGCATATTCAAACCCATGCCGAAGGATCCAGTGACGGAAGACCCTCCGAAGAAGACCAGAAGAGTGCATCAAGGACGAAAGGAGATGGGGACAACATAGATGCACCCTTTTCTGATTTTTCTGGATTGAACTCAGAATCCTCACATGGTGATTATGATGATTTTATGGAGGATGAGAATGACGACGATAGTCTACAGAATTCTGCGGAAATGGCGAGGTTTTTCAAGCACGATCAGCATTTCATAGAGCGAGGAAAACAGTTTTCGAGagacataaaaatattacccAATGGCGCACTGGACTTGACTCCACGGAATACTCAATCACAATCGCCTGATGGGGAGTCCCCGACTAGTTCCAATGCCCAAGCTGCTTGCAGCGATTCTTCCAAAACATTTGGACCATCATCGAAAGTTCTAAGCTCTCTACCGCAATCTCATTTGTCGAAGTCCCCATTTAATCCTTTGGGAATTTGTGGTCTCCGTGGGAACTTGACATGCCATATTTGCTTCAAAACTTTCGCCTGCAATTCCGCTCTGGAAATTCATTTCCGCAGCCACACAAAGGAGCGCCCCTTCAAGTGCTCCATCTGCGATAAGGCGTTCACCACAAAGGGTAATATGAAGCAACATCTCCTCACGCACAAGCAACGAGAGTTTGACAGCCGAAATTCGAGCCAATCTGCAGATGGTAATTATGCTGGAGTGTCGAAAGATGAATCTCAGAAATCTGAGGAGCCGGAATTTGACTGCAAACAAACAGAAATCCAGCAAAACGGACCTCTGCAGGCAGGATATCAGTTCTCCTTCAACAATGGTGCCGAAGACAGTAAGTCAGGCACAAAGCGGCCCTTGCCCGACATTGAGCAGCCTCTGGCCAAAAGGCCAATTGCTAGCTCCCCCCTGTCCGTCGGTAGGCAAAGTGTCAGCCCACCTCAAGAGGCGGCCGAAAGTCAAACGACCCTGCGATTGCAAACACCAGCAAAGGATCCTCAGCCGCAACGTGTTGAATCCCAGCTATCGACTCAACTGGACCCACCTGTTAACACCAAGCACCTGTGCACCGTTTGCCGGAAGAACTTCAGTTCCAGTTCTGCTCTGCAAATTCATATGCGAACCCACACCGGGGACAAGCCATTCCGGTGCTCGGTGTGCCAGAAGGCCTTCACCACCAAAGGGAATCTCAAGGTGCATATGGGCACCCACATGTGGACGAACGGGTCGTCACGGCGGGGTCGGCGTATGTCCTTGGAGCTCCCATTGAATCGGTCTCTGCCTATAGGCCCTCAAGAGGAATTCATTTCCAGGCGTACTGACCTCTTCTATCCGTACTTGCCACCCTTCTTGAACGGGATACAGCAGAAGtTTAACGAAATGGGCTCCCTGCCCTCCCCACAGAACGGATTTCCAACAGGATTTGGGCACTTGCCGCCTGCCATGCAGGGGAAATACTCGGGGTTCCTAGGTTTCAGCCCGTTCTTTCCTCATCATGGCTCGGCAGCGCAAAGCTTCCATCAACCCCTATCAGCGTCTTCTCCTGAAGATAAGCAACCAAATGAGGAACCAAATCAGAAAACCGTTACTGGTGAGCAGCACAAGACACCCCTAGAGGGAGACGGACCACGACTATGGGATGACGGGTATCCGAAGCAATCCCCGAATGGAGAAGGTCGTCCACTTCAGCGCGGCCCAGAAGAGGTTTCTCGCCTTGCAACCCCCCATGAGGAGACGCTCGCAGTGTGA
Protein Sequence: MITAAAGSEPSSRYLEDPTAAGEQEKWLDSTVLHTLATELSKFDDPQTRSDIMCSEERDKGESSSSYDEDEDDESTDRNIPYYKRHLLNKFVLKSEIADRNNNSGNREEDCDYKFNDNRALDLSKVPSYRVPSSHVTLEALQNTKVAVAQFAATAIANTSNYEDAIKDLAVVQSTLFNLQHQQLLQIQLIQQLQSQLSVHQVDNKDNLDESEESNAVRESGKDEESWKKKETAEEDKCTVEVKLLLEEKLPIEEKLPVEEKLPEENTNENETNSQLKIENQHNNSVNEVKDEIKAPQKPADLSLQSPLCNINSSLAFSIITNHDPPPPPDEPNSLEMLQKRTQEVLDSASQSLLGNNLADEFAFGKDRSADGKGRNEPFFKHRCKYCGKVFGSDSALQIHIRSHTGERPFKCNVCASKFTTKGNLKVHYQRHTQKYPTPPLGPNCIPEYPNNFHPKFMSPLTPPQLGHFSAPKHPSSAGELPFPPGPPFLPLVPFRSPMHNMMRPHGIPHPCPSPPILDQEEPADLSIPLKSHNSNRKEIEAETSKFCKEDASKPSKRISLKPILQNIPKEEDTKPMSTYSQYSGDSDDSDQEQPENLSKRSSVSRNSSLSDSTPENAKSMGWSQGCDNGDTSWESWIEIDKMSETSKLQELVDNIENKITDPNQCPFCQRYMACRSALQMHIRTHTGERPYRCKICSRAFATKGNLKAHMCIHKIKPPVRSQMKCPVCHQRYPNSSALQMHIQTHAEGSSDGRPSEEDQKSASRTKGDGDNIDAPFSDFSGLNSESSHGDYDDFMEDENDDDSLQNSAEMARFFKHDQHFIERGKQFSRDIKILPNGALDLTPRNTQSQSPDGESPTSSNAQAACSDSSKTFGPSSKVLSSLPQSHLSKSPFNPLGICGLRGNLTCHICFKTFACNSALEIHFRSHTKERPFKCSICDKAFTTKGNMKQHLLTHKQREFDSRNSSQSADGNYAGVSKDESQKSEEPEFDCKQTEIQQNGPLQAGYQFSFNNGAEDSKSGTKRPLPDIEQPLAKRPIASSPLSVGRQSVSPPQEAAESQTTLRLQTPAKDPQPQRVESQLSTQLDPPVNTKHLCTVCRKNFSSSSALQIHMRTHTGDKPFRCSVCQKAFTTKGNLKVHMGTHMWTNGSSRRGRRMSLELPLNRSLPIGPQEEFISRRTDLFYPYLPPFLNGIQQKFNEMGSLPSPQNGFPTGFGHLPPAMQGKYSGFLGFSPFFPHHGSAAQSFHQPLSASSPEDKQPNEEPNQKTVTGEQHKTPLEGDGPRLWDDGYPKQSPNGEGRPLQRGPEEVSRLATPHEETLAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -