Lcyl020130.1
Basic Information
- Insect
- Leptogaster cylindrica
- Gene Symbol
- hang
- Assembly
- GCA_963082835.1
- Location
- OY720108.1:8956397-8962117[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.05 5.7 8.3 3.0 1 23 275 298 275 298 0.93 2 19 0.084 9.7 7.6 0.8 1 23 337 360 337 360 0.93 3 19 0.00013 0.015 16.4 1.4 1 23 407 430 407 430 0.95 4 19 0.00079 0.091 13.9 0.1 1 23 438 461 438 461 0.94 5 19 1.3 1.6e+02 3.8 0.8 2 23 474 496 473 496 0.94 6 19 3.2 3.7e+02 2.6 1.0 1 23 499 521 499 521 0.95 7 19 0.0007 0.081 14.1 1.2 2 23 583 604 582 604 0.97 8 19 3.9e-06 0.00045 21.2 0.8 2 23 651 673 650 673 0.93 9 19 1.7 1.9e+02 3.5 0.5 1 23 681 704 681 704 0.96 10 19 0.0023 0.27 12.5 0.2 1 23 718 741 718 741 0.97 11 19 0.0069 0.8 11.0 1.1 1 23 763 785 763 785 0.97 12 19 0.0012 0.14 13.3 0.9 1 23 793 816 793 816 0.96 13 19 0.41 48 5.4 0.2 2 23 824 846 823 846 0.90 14 19 0.0078 0.91 10.8 0.5 2 23 891 912 890 912 0.96 15 19 1.3e-05 0.0015 19.5 0.1 1 23 946 968 946 968 0.97 16 19 4.5e-06 0.00052 21.0 0.9 1 23 990 1013 990 1013 0.94 17 19 0.033 3.8 8.8 0.1 3 23 1036 1056 1034 1056 0.93 18 19 0.0056 0.64 11.3 1.9 3 23 1070 1090 1070 1090 0.99 19 19 0.0015 0.17 13.1 2.7 1 23 1190 1212 1190 1212 0.96
Sequence Information
- Coding Sequence
- ATGTCAGACGAAATAGTCGTGAGTGCACGACGAAACTGCTGTCGCTTGTGCTTGCGCCCGGACAACGAGTGTGTTCCAATTTTCACAAGCTTTGCCGCCGATAAAGAGCCTCTTTCGACGAAAATTCTAGCTTGTGTTGACATCAAGGTTAAAGAGTCCGACGAAATCTCAGTGCAAATATGTCACTATTGTGTAAGCTTCATCAACTCGTGGCAGAGTTTCAAGAATCAATGTATTGCCGCCAACGTGAAGCAAGAGGGATGGTTGGAGAGGGCTAAATCGGTAATCGCTCATCTGACCAACCAGTCATTGGGACTTTGTGGATCCACGAATGATGGATCTTTAATGTGCTCCTCGTCCAGCACTTCCATTAAAACAACgTCACTCTCGCCTCTCTTGCCTGTGAAACAAGAACCGAAATTTGACGAAGACTCTGCCTTTACCACCGAAACAGAGCCAAATGATGAAACGGAAGAATCCATTAAAGTTAGTGTGGATCCATTACAGTTCCTAAGTGAAGATGATGATGAAACGAACGACTCGGTACCCAGTTTACCCATAATGTTGGAAGGTCCACAAATATTGACATCGCTCGGACTTCGACATGTCAATAGCGTCGATACGAATTCCGTTCTGGTAAAACTAATGAACGGGTCATTGAAAGAAGATGATAACCCCAAGAGCCAACGATTTGCTGAGGAAATTACTATACAAGCAATGACAATTGCTTCCAAAGCCAGCGCAAATAATTTGCCTCTAGAAGTGAACGGAGATCAAGCCAAAGacgCAACAATTCCCTccgattttttaaataagaggCTCTACCAATGTAAAATCTGTTCAAAGATTGTTAAACTAAGGAAAGACTTTAGAGCTCATGTCTACAATTGTCATCCAGATCtccaaaagaaaaatgttccaCCTGGTTCCTGTGTGTTTTGTGGTATTGAATTTGATGATCCTCTCGAGAGTAAACTTCATTACAATAATATCGAATGCGTTGCTATTTTTCAATGTGCTGCATGCGATGGAAAATTCACAAGTCATGACAGTTTTGTTCAGCACATCTACGAAGACCATGCATCTGAACTATCTGTAAATAACAACGATTGTTACATGCCAGGAAATTCCAGGGTGATCGACTTAAAGAACGATTCAGAAGAAAAGAATGATGAAGAAAACCGTAAAAGTGCGGAGAAGTCTGAATCGAAAAGACCACATGCGTGCACAGTTTGCGGGCAGAGCTACAACAATAAGAACAATGTTCTGCGTCATATGGAATCAAAGCATCCTGATCAACTACCAGCGACATACAAATGTCCAAAGTGCGAAGTCGGTTATCCGAGGTTATCGATGTTGCGCAACCACACGATCGAGGAGCATCAGTGCAAGTTGGAAAAGTTAAAACAAGAGAATATAGTGTGCCGCTTGTGTTCGGCATGTTTTGATGCCAAGGACAAATGGATCGAACATCAAACTAGAAATCATTTACGATACGCTTGCTCTCAATGCACTTATCAAAATAAGTATTTGGACGAGTTCTTGAAGCATTTAGGGACGCATACAAgtattttctcaaaaacttGGCTGAAAGagaacagcaacaacaaatcgAGTGGGAAATTCTCGGCCAACAATTGCAAGGAATATGATTTACCTACACAGTACAACGGGGAGAACGATGGCGATGATGAGGGGGAAAAGGAGCCGCCACGGAAGAAGAGGAAATCTGATATGGAGTACAAGGAGTGCATGATATGTCACAATGTCTTTACCACTAGTTTGGGATTGTCGAATCACATGAGAATCCATAACACTCAACTACAACACAAGGAGCTAAGCACAAGCAGTGCCTCGAATACCAAATTCAAGCTGCCATTGAATATAGATACGTACGCAgataatgcaataaaaaaagtcATGGACTCGGATGCAAAGGCACGCAGACTTCAATGCAATTTCTGTCCGAAAACGTTTGCCACGAAGGATACTCTACGCCGACACTTACTTGAAATGCATCAGATCGACAGCGAACGCGTTTTTAAGTGCAGTTTATGTCTGGTGCAGTTATCCAATATCAACTTTATAAAGAAACACATGGAAACGATACACGGACCCAACACTTTCAATatggatgaaataaaaattgaatatcaatGCAGAAGCTGCCCAGACTCGTTTCCCAGCAAAGAGCTGCTTACTGCTCACATTAGTTCAATGCATCGGGACAAGAAGCCCAATACTGCTCCTATTCCGCTGGTTGCCCAGGACAAGCCCACGTTTTGGTTTCAATGCCGGTACTGTTCCTCTAATTTTGACACGAATAAGAAATTGGCCATTCATTTAAATGCACACGACGAATATGATTCCAAAGACTACTCGTGCAAGGACTGTGGAAATGTCTACAGCGGACGTAAGAGTTTGTGGGTGCACCGATACAAGAAGCATCCCATGGTAGCTGACCCAGTACCATGTAAATTGTGCGAGAAGATCTTCTTCGATACGAATATGTACGAACTTCACAATAAGTGGGTTCATCAGAAAGAGGAGGAGAAATTTGAGTTGAGGCCACATAATAATTTGAATGAGCCACATAATAATTCTGTTGACAATGCTGAAGACAAGAACGCAGAAgttcaaatgaaaatggaaCCAAAAACTGAACTAGTCACCTGTGCACAGTGCAACGAGAAATTTTACGATCTAGAACTGTTCAAAAAACATGCGGAGAAGCATGAGTTCGACTTCTACACCAATAATCCGTTGGCAGCTATTCTTGACGCAGGTCCAAGTCCTAATAAATTTGTGGTCGTTCGAAGCGAGCAGGACACCGCTTACATCTGTGACCTTTGCCCGAAGAGTTTTCCCAACAACACTGCGCTTAAGGTTCACCGAAATTGGCACTTTCGAGGAGACAGCAAACAGGTCTGCAAAAGTACGCAAAAGAAGATTAAGGGAACATCGAGCTACAAGTGTCAGTACTGCAGCTCAACTTTTGTAAATAGTAGTAATCTTCGACGGCACATTGCGGAATTACACAAACATGTGACTTCCTCTTCCACTGGCGTCCAACTGACGAAAGTGCTAATCGAGAAGTACCTGGCATGCAGTACGTGCGGAATCACCCTGTCCACTCGCTCTGCCTGGATTAATCACAAAATAGATCACGTTCGACAAGATTCATGCATCTCCTCGAAGGGTTGGGGATGCGAGATATGTGGCCGGCTGGTATCCCGAAAGCATCGACTTCTTCAACACATGAATTCCCATTTGCGAGAGAGCGAACCATACGGCAGCACTAGCAGTCCTGAATTGGCCAATGCTGAATCTAATGGATTCGAGAGCATCTCCCCGACATCGGTGACCGATGAATCGAGCAGTGACCATCAGAACACTGAGAATATTGATGAAGAAAAAATGAGAGATGCTATTATCGTAAATCCAGCCAAGCAAAATTATAACGATGATTACGAGAGCGATGACAGTTCGTTGGACTTAGATTTCGAAGATGATAGCAGTTCAGATCAACAAGATGATGATAAGGAACCGAACGCCAGCTCACAATCACATTCCTGTGATTTATGTCACATCACTTTCTACACGTCCAAGGAATTGCAACTTCATGTCGCAAGTCACTTTTTGAACGGACCTGGATCAGTTACATTAACCGATTTACCCAAAGATCACGACTTTGACAGCAAGGAGACCCACTGA
- Protein Sequence
- MSDEIVVSARRNCCRLCLRPDNECVPIFTSFAADKEPLSTKILACVDIKVKESDEISVQICHYCVSFINSWQSFKNQCIAANVKQEGWLERAKSVIAHLTNQSLGLCGSTNDGSLMCSSSSTSIKTTSLSPLLPVKQEPKFDEDSAFTTETEPNDETEESIKVSVDPLQFLSEDDDETNDSVPSLPIMLEGPQILTSLGLRHVNSVDTNSVLVKLMNGSLKEDDNPKSQRFAEEITIQAMTIASKASANNLPLEVNGDQAKDATIPSDFLNKRLYQCKICSKIVKLRKDFRAHVYNCHPDLQKKNVPPGSCVFCGIEFDDPLESKLHYNNIECVAIFQCAACDGKFTSHDSFVQHIYEDHASELSVNNNDCYMPGNSRVIDLKNDSEEKNDEENRKSAEKSESKRPHACTVCGQSYNNKNNVLRHMESKHPDQLPATYKCPKCEVGYPRLSMLRNHTIEEHQCKLEKLKQENIVCRLCSACFDAKDKWIEHQTRNHLRYACSQCTYQNKYLDEFLKHLGTHTSIFSKTWLKENSNNKSSGKFSANNCKEYDLPTQYNGENDGDDEGEKEPPRKKRKSDMEYKECMICHNVFTTSLGLSNHMRIHNTQLQHKELSTSSASNTKFKLPLNIDTYADNAIKKVMDSDAKARRLQCNFCPKTFATKDTLRRHLLEMHQIDSERVFKCSLCLVQLSNINFIKKHMETIHGPNTFNMDEIKIEYQCRSCPDSFPSKELLTAHISSMHRDKKPNTAPIPLVAQDKPTFWFQCRYCSSNFDTNKKLAIHLNAHDEYDSKDYSCKDCGNVYSGRKSLWVHRYKKHPMVADPVPCKLCEKIFFDTNMYELHNKWVHQKEEEKFELRPHNNLNEPHNNSVDNAEDKNAEVQMKMEPKTELVTCAQCNEKFYDLELFKKHAEKHEFDFYTNNPLAAILDAGPSPNKFVVVRSEQDTAYICDLCPKSFPNNTALKVHRNWHFRGDSKQVCKSTQKKIKGTSSYKCQYCSSTFVNSSNLRRHIAELHKHVTSSSTGVQLTKVLIEKYLACSTCGITLSTRSAWINHKIDHVRQDSCISSKGWGCEICGRLVSRKHRLLQHMNSHLRESEPYGSTSSPELANAESNGFESISPTSVTDESSSDHQNTENIDEEKMRDAIIVNPAKQNYNDDYESDDSSLDLDFEDDSSSDQQDDDKEPNASSQSHSCDLCHITFYTSKELQLHVASHFLNGPGSVTLTDLPKDHDFDSKETH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -