Basic Information

Insect: Leptogaster cylindrica
Gene Symbol: ham
Assembly: GCA_963082835.1
Location: OY720105.1:1909879-1915626[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.2 1.4e+02 3.9 1.5 1 22 83 104 83 106 0.89

2 9 0.00034 0.039 15.1 1.5 1 23 113 136 113 136 0.94

3 9 7.3e-08 8.4e-06 26.6 2.4 1 23 142 164 142 165 0.96

4 9 9.8e-07 0.00011 23.1 1.7 1 23 171 193 171 193 0.95

5 9 2.4e-05 0.0028 18.7 5.0 1 23 199 221 199 221 0.99

6 9 0.00014 0.017 16.3 1.1 2 21 229 248 228 249 0.95

7 9 1.6e-08 1.9e-06 28.7 1.2 1 23 590 612 590 612 0.99

8 9 3e-07 3.5e-05 24.7 1.7 1 23 618 641 618 641 0.97

9 9 2.7e-05 0.0031 18.6 6.8 1 23 647 669 647 669 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.2	1.4e+02	3.9	1.5	1	22	83	104	83	106	0.89
2	9	0.00034	0.039	15.1	1.5	1	23	113	136	113	136	0.94
3	9	7.3e-08	8.4e-06	26.6	2.4	1	23	142	164	142	165	0.96
4	9	9.8e-07	0.00011	23.1	1.7	1	23	171	193	171	193	0.95
5	9	2.4e-05	0.0028	18.7	5.0	1	23	199	221	199	221	0.99
6	9	0.00014	0.017	16.3	1.1	2	21	229	248	228	249	0.95
7	9	1.6e-08	1.9e-06	28.7	1.2	1	23	590	612	590	612	0.99
8	9	3e-07	3.5e-05	24.7	1.7	1	23	618	641	618	641	0.97
9	9	2.7e-05	0.0031	18.6	6.8	1	23	647	669	647	669	0.99

Sequence Information

Coding Sequence: ATGGCCTGTTCATGGTGTCGTGAGATAAGGGACGCGGTTGATGGCGTTCCGCTCCTAATGATGAACCTATTGCAGAATTGTGGCTATAACAGTATAACGATCGAATGGTTTTCTCTTGTTGCAGGATCACAGCACAGTGGGACAACGGGCGAGGACGATTTCCCCACCTCCACCGATCTCGACAACAGCAAGCCGGAGAACAGCAAGGATCGCGATCAAGACTCAGACGACGAGGACGGCATCGATTTTCGCTGCGTGGTCTGCGAGCGCCAGTGTCACGATATCGATCATTTGGATGACCATTTGGTAGCTGCACATCATTATCCTAAGGACACATTCCGGTGTGAATTGTGCCCGAAGAGTTACTGTTATCGGCCGTCGCTGCTGAGACATCGAGCCCTTGTGCATGGTGAATTAAGGAAGTATCCTTGTGAGAATTGCACAAAGGTATTTTGTGATCCATCAAACCTACAACGACATATTCGTGCTCATCACGTTGGTGCCCGCAGTCACGCTTGCCCAGAGTGTGGCAAAACATTTGCAACATCATCTGGACTTAAACAGCACACACACATTCATTCATCAGTGAAACCCTTTCAGTGTGAGGTGTGCTTTAAGGCTTACACACAGTTTTCCAATCTTTGTCGGCATAAACGAATGCATGCAGATTGTCGAATGCAAATCAAGTGCACAAAGTGTGGACAGAGTTTCAGTACTGTGACATCATTATCTAAACATAAGCGCTTCTGTGATTCAACAACGATACCACCTCATCATCATCCCCATCAACAGCCACCCCCACCGCCACCGCCTGGTGTGCCGCCAGCTATGACGACTCCACCAAATCCGTTTTTCATGTTTCGAGGTCCTCCACCATTTTTCCCTCCAGGATTTCCATCCTATGGAATACACGGAATGTTCCCGCCGAATCCAGCGCAAACGCCAAGTTTCCCACTACTCTTCCCGCCTAAACCAAACTTAGATATGACAATGCCAGAAAAGGAGGGTGGATCGCCTCCTCGCCACGTGGGCTTAAGTCACCACTATGGGGGTCGAAACTCACACGACGACTCCCGATATACTCATGTGGGTCCTCCGCCAGTTAGGCCTATGTTCATTGGTCAACAGCAACAGCAATCGCTGCATGCCATGAGTAGCAATCATGAAGCAAAAATTGATCAATCGTCATCGAGAGGAAAATTCCCTGGGGGAGTGGAGGAGGATGCGAATGTCTCCCCTGTAGACATGAAGATCTCTTTAACCGATATTGAATGTCGGAGCGTGAAGGAGGAAAGGAGTACACCCGATGATAAGAATCACATAAATGTAACATCACCCTCACCAACGCACGAGTCAACACCAGCAGAACAGCCTCTCGATCTTTCTGTAACTAGGAATAGAAAAAACAGCCCGTGTCTAACACCAGAGCCAATAAACAAGCGTTCGCGGTCGCATCCATCTTACCAAGCAAGTCCTACGCCGTCGGTTTCACCAGGACCAACACCATCACCATCACCCCCAGGACCACCGATGGCTTGTCCTAGACCCATCCACCCCATGCTGTTGGAAGCAATTTACAGGCCTTCGACCGGGCTGAGTGCTGCCTTTCAACgaccttttccttttttaggACCAATGGGCGGTCGGCCAGGCTTCGACCACATTCTGCACCGCAATGGGCCGTTTCCGCCCAAACCATTTCATGAAGCTCTGATGGCTGCAGGAGGACTCTCAGGAAATATGGgaggtggaaaaataaaggaCCGTTACAGTTGTAAATTTTGCGGAAAGATTTTTCCACGATCAGCGAATCTGACTCGACATCTCAGAACGCATACCGGCGAACAACCTTACAAGTGTAAGTATTGCGAGCGATCCTTTAGCATTTCCAGCAATCTTCAGCGACATGTACGGAACATCCACAACAAGGAAAGGCCCTTTAAATGCCATTTATGTGATCGTTGCTTTGGGCAGCAGACTAACCTGGATCGGCATCTCAAGAAGCACGAGGCTGATGCCAATGGTCTGGGCATGGGTGTTGGGGACTCACCATCTTCCAATGAGGCTGATCGGGAGGACACATACTTCGACGAGATCCGATCGTTCATGGGTAAAGTGACATACACTGGCGGGGTGTACACCCCAGTCAGTATAGGGGGtggagaaaatgaaattgaagacGGCAGTGACATTGACACCGAAGGGCTCAACGACAAAACCCCACTCAACAACAACTCTGCGACGATTGAAGTTTCTACGTAG
Protein Sequence: MACSWCREIRDAVDGVPLLMMNLLQNCGYNSITIEWFSLVAGSQHSGTTGEDDFPTSTDLDNSKPENSKDRDQDSDDEDGIDFRCVVCERQCHDIDHLDDHLVAAHHYPKDTFRCELCPKSYCYRPSLLRHRALVHGELRKYPCENCTKVFCDPSNLQRHIRAHHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCTKCGQSFSTVTSLSKHKRFCDSTTIPPHHHPHQQPPPPPPPGVPPAMTTPPNPFFMFRGPPPFFPPGFPSYGIHGMFPPNPAQTPSFPLLFPPKPNLDMTMPEKEGGSPPRHVGLSHHYGGRNSHDDSRYTHVGPPPVRPMFIGQQQQQSLHAMSSNHEAKIDQSSSRGKFPGGVEEDANVSPVDMKISLTDIECRSVKEERSTPDDKNHINVTSPSPTHESTPAEQPLDLSVTRNRKNSPCLTPEPINKRSRSHPSYQASPTPSVSPGPTPSPSPPGPPMACPRPIHPMLLEAIYRPSTGLSAAFQRPFPFLGPMGGRPGFDHILHRNGPFPPKPFHEALMAAGGLSGNMGGGKIKDRYSCKFCGKIFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFKCHLCDRCFGQQTNLDRHLKKHEADANGLGMGVGDSPSSNEADREDTYFDEIRSFMGKVTYTGGVYTPVSIGGGENEIEDGSDIDTEGLNDKTPLNNNSATIEVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00424852;
90% Identity: -
80% Identity: -