Lcyl003308.1
Basic Information
- Insect
- Leptogaster cylindrica
- Gene Symbol
- -
- Assembly
- GCA_963082835.1
- Location
- OY720105.1:19572361-19575774[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.6 1e+03 1.2 0.3 2 21 21 40 21 41 0.87 2 17 0.0053 0.61 11.4 2.3 3 23 64 84 63 84 0.98 3 17 0.0027 0.31 12.3 3.5 1 23 90 113 90 113 0.95 4 17 0.00093 0.11 13.7 0.5 1 23 116 139 116 139 0.97 5 17 0.15 17 6.8 0.5 3 13 149 159 148 160 0.90 6 17 0.034 3.9 8.8 3.0 1 23 176 198 176 198 0.98 7 17 0.00016 0.018 16.1 3.0 1 23 204 226 204 226 0.97 8 17 9.3e-05 0.011 16.9 0.8 1 23 232 254 232 254 0.94 9 17 0.12 14 7.1 0.8 1 22 260 281 260 281 0.96 10 17 0.0094 1.1 10.6 4.3 2 23 560 582 559 582 0.97 11 17 0.00013 0.015 16.4 1.1 1 19 604 622 604 624 0.96 12 17 1.1e-06 0.00012 23.0 0.9 2 23 662 684 661 684 0.96 13 17 0.00018 0.02 16.0 0.1 2 21 696 715 696 716 0.94 14 17 0.0034 0.39 12.0 4.2 1 23 724 746 724 746 0.97 15 17 4.5e-05 0.0052 17.9 2.8 3 23 754 774 752 774 0.96 16 17 1.4e-06 0.00017 22.6 0.4 1 23 780 802 780 802 0.99 17 17 0.0043 0.49 11.6 2.6 1 22 808 829 808 829 0.96
Sequence Information
- Coding Sequence
- ATGGCAAGCTTAGAGTCAGAGACGTCTGATGAGGAAAGTGAATTTACAGCTGGCGAGAATCGTTGCAAATATTGCAGTACCTTGTTGTCGAAAGATGCAAACATTGCAAGACATGAAAGGAAATGCCTTTCTGCTCTAACCAATACAGCGGATGTCGTGACTTGTGAAGATGGCACGAAGAGGCTTTTGTGTGATatctgttttaaattgtttaagtaCTTAACTGGATTGAAGAGACACAAAAAGCGTCATGAACCGCCGGGAGGATTTGTTTGTGCGTACtgcaaaacgaaattttgCAGCTCCCAAGAACTGGATAAGCATAAAAGGGACGAACATCAGGTTTACAGTTGCCAAATATGCAAACGGGTTAGTGAAACTCTTTCAAGTTATATGGAGCACATCAAATCCGATCATAACGGCTTGGACAGGATTTGGGCGCACTGTCATGACTGCGGCCAGAATTTTAAATCCCAGGCCATTGTGGATTACCACAAGAGCACCAAATGTGGAACGGTGAAACCGTTTAAGTGTGATCAATGCGGTTCATGCTATCACACAATAGCAAcattaaatatacataaattgaTACATAAAGGAGAGAAATCCTTCTGCTGTAGCTACTGCGGGAAAAGTTTCCTCAGCAAGGGGCAGCTTACAGTTCACGAAAGACAGCACACTGGGGAGAAGCCCTTTAAATGTGAGATTTGTACCAAAGCATTCTCCTACCGTGAAAGTTTAGTAACGCATTCATCATTACACACAGGAATCAAGCCTTATGTGTGCGAGGCATGCCAAGCACGATTTTCTTGCGTTGGAAATCTACAAAAACATCGTCGAACACGTCCTAATAGTTGTGGTCTTCCTCAGTTTTGCGTAAATAAAAAAGCTGCGCCGAGGCCCAGCAATAGAGTGCCAGGTACTCTTATGATGACCAACTTGAAAATTAcgaaagcaaacaaaattctcgggattaaaagtaaaatgaaatcaCGAAGTGACAGTGAAAAGGAGGTAGTAGATACCAATGGAAAACTGATAGCGACAGATGAGAATGAGCTGCAATTTGATGAACTACACCAAGATATTCTGGAGAAAACGGAGCAAATGGAAGAATCGAATGAAACGCAGAGCACTCTTCAAGTGATAAATATCGAGGTTTTAACTGATCCTATTCAGGAAGaAAATCTTGAAGCACTTGAATCCAGTGGAACTGATTCTCATATCGTCAAGACATCTGACAATAATTACGAAGCCATGGAATATGATAACAGTCAAGAAGCCAGAATCATTGAAGAGGAAGATGAACAACACTATCCAAAAAAGCAAAGTGTATTAGCCAAGTCAGCGGAAGAAGCGGCAGTTGGTGAAAATGACAAAACTAATGagattttgaatattgaatcAAGTGTAGCAAATCATAACAACCAAAGTGCTGGCTCCGAAGTATTTTTTGTAGTCATCAAGGACCACACGGAACATGAAGACATGGAAGAGAACTTATCATTAGCAGTTAtaaaaactttagaaaatcAGGAGAAATCATCAAAAAGTAATgagaataatgaaattaattctgaGAATCAAAAAGAGTTTCATGAAATCAGTGAGAGCGATGCTGATGATAAAAGTCGGGACGATGCggatttcaattcaaatccATCGTCGGTGTTAAATAAATGCCATTTATGTCCCAAAGTATATTACCACAGGAGGCCATTCTTAAAGCATCTTCGAAATGAGCACAGATTGCAAGTTCAAGAATTGCTGAAATATCCACCTgataaaaaaagtaagaaatcTGGAAAATACGTCTGCAAAGTTTGCACAAAGAGCTATAATCACCAAAAATCATTGGAAAAACACGAAATTTGTCATGGTCCTGATGGTAATTTAGTTTATAAAAGTGCGTTCTGttataaattctttgaaaCAGAAAATGAAGCTAAGGAATATGACAATGTTGAGTACAATGATACTGTGACGTGCTCCATTTgtggaaaaactttttctaatCGAACGAGGTTAGCACGTCATCAACGTAATGTACACGATTCCACTGgtaaaacaaagaagaaactGAGAGTTTGCCAAAGGTGCGGGAAAACATTTACCAACGGTTCAAGTTTAATCGACCATGTGCGATCATATTGCGGGAAATCCCCGTTATATAAATGCGAAACTTGCTATAAACGCTTCCATAATGCTCAATCATTGAAAACTCACAGTAGCATTCATACAGGAGAACTTCCGCATTTGTGCACTTACTGTGGAAAAGGCTTCCGAACTTTTGGTCAAGTAAAGGTGCACCAAAGGAAGCACAATGGCGAGAGACCTTTTAAATGTCCGgaTTGTTCCAAAGCATTTGCCTACCGAGAAAGTCTTCTGACTCACATTTCCACTCACATGGGAGTTAAACGATTCAAATGCGATGGTTGCGATAAGAGATACTCGTGTCTTTCAAATCTTCTGATGCATCGCAGGAAAACCAAAGccgcaaaatgtattttggCATCTGTAAACACCAAACCGATGACAATAGGAGTCTCTCGAGCCCGAAGAGTACCCGAAATGGGCACGAACGCTCTTGACGGTGACGATGATATGGGACTGGCCCCTCACGCTGTGAAGCCCAGTTTTGATCGCTCAGCGagcatagaaactttcaagtAA
- Protein Sequence
- MASLESETSDEESEFTAGENRCKYCSTLLSKDANIARHERKCLSALTNTADVVTCEDGTKRLLCDICFKLFKYLTGLKRHKKRHEPPGGFVCAYCKTKFCSSQELDKHKRDEHQVYSCQICKRVSETLSSYMEHIKSDHNGLDRIWAHCHDCGQNFKSQAIVDYHKSTKCGTVKPFKCDQCGSCYHTIATLNIHKLIHKGEKSFCCSYCGKSFLSKGQLTVHERQHTGEKPFKCEICTKAFSYRESLVTHSSLHTGIKPYVCEACQARFSCVGNLQKHRRTRPNSCGLPQFCVNKKAAPRPSNRVPGTLMMTNLKITKANKILGIKSKMKSRSDSEKEVVDTNGKLIATDENELQFDELHQDILEKTEQMEESNETQSTLQVINIEVLTDPIQEENLEALESSGTDSHIVKTSDNNYEAMEYDNSQEARIIEEEDEQHYPKKQSVLAKSAEEAAVGENDKTNEILNIESSVANHNNQSAGSEVFFVVIKDHTEHEDMEENLSLAVIKTLENQEKSSKSNENNEINSENQKEFHEISESDADDKSRDDADFNSNPSSVLNKCHLCPKVYYHRRPFLKHLRNEHRLQVQELLKYPPDKKSKKSGKYVCKVCTKSYNHQKSLEKHEICHGPDGNLVYKSAFCYKFFETENEAKEYDNVEYNDTVTCSICGKTFSNRTRLARHQRNVHDSTGKTKKKLRVCQRCGKTFTNGSSLIDHVRSYCGKSPLYKCETCYKRFHNAQSLKTHSSIHTGELPHLCTYCGKGFRTFGQVKVHQRKHNGERPFKCPDCSKAFAYRESLLTHISTHMGVKRFKCDGCDKRYSCLSNLLMHRRKTKAAKCILASVNTKPMTIGVSRARRVPEMGTNALDGDDDMGLAPHAVKPSFDRSASIETFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -