Basic Information

Insect: Leptogaster cylindrica
Gene Symbol: -
Assembly: GCA_963082835.1
Location: OY720109.1:26792000-26794014[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.8e-06 0.0011 19.9 3.4 2 23 187 208 186 208 0.96

2 12 7.1e-06 0.00082 20.4 2.4 1 23 215 237 215 237 0.98

3 12 3.2e-06 0.00037 21.5 1.4 1 23 254 276 254 276 0.99

4 12 0.00013 0.015 16.4 3.8 1 21 285 305 285 307 0.95

5 12 5.8e-06 0.00067 20.7 0.8 1 23 313 335 313 335 0.98

6 12 0.00021 0.024 15.8 4.4 1 23 341 363 341 363 0.97

7 12 1.2e-05 0.0013 19.7 0.9 1 23 369 391 369 391 0.95

8 12 0.0077 0.89 10.8 3.0 1 23 397 419 397 419 0.97

9 12 7.4e-05 0.0086 17.2 1.1 3 23 427 447 425 447 0.96

10 12 5.9e-07 6.8e-05 23.8 1.9 1 23 453 475 453 475 0.98

11 12 4.1e-07 4.8e-05 24.3 1.7 1 23 481 503 481 503 0.98

12 12 5.9e-05 0.0069 17.5 0.9 1 23 509 531 509 531 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.8e-06	0.0011	19.9	3.4	2	23	187	208	186	208	0.96
2	12	7.1e-06	0.00082	20.4	2.4	1	23	215	237	215	237	0.98
3	12	3.2e-06	0.00037	21.5	1.4	1	23	254	276	254	276	0.99
4	12	0.00013	0.015	16.4	3.8	1	21	285	305	285	307	0.95
5	12	5.8e-06	0.00067	20.7	0.8	1	23	313	335	313	335	0.98
6	12	0.00021	0.024	15.8	4.4	1	23	341	363	341	363	0.97
7	12	1.2e-05	0.0013	19.7	0.9	1	23	369	391	369	391	0.95
8	12	0.0077	0.89	10.8	3.0	1	23	397	419	397	419	0.97
9	12	7.4e-05	0.0086	17.2	1.1	3	23	427	447	425	447	0.96
10	12	5.9e-07	6.8e-05	23.8	1.9	1	23	453	475	453	475	0.98
11	12	4.1e-07	4.8e-05	24.3	1.7	1	23	481	503	481	503	0.98
12	12	5.9e-05	0.0069	17.5	0.9	1	23	509	531	509	531	0.98

Sequence Information

Coding Sequence: ATGTACGAGAACATATCATCAGTGACGATCTGTTTAGGCGATGGACTCCCAGAGGAGATATGCCAGAATTGCATTGATTGCCTTCTCGCAGCCCATAACTTTCGggaactttgcataacttctGATAGCAAGCTGAAAACTGAATTCAGTCGCCGCAGCAATGCGATTATTtgtcaacaaaatattaaacgaGAAGAAGACGAAACCGTTAATTgcatcaattcaattttatctgAAGATGAATTCTCCCCAAAGGAGTTAAATGCAGATAGTTTGGAGAAAGAGTTTAGCCAGGATGATTCGATGGTGTGTGGCATTTTTGAAATGCATACAAAAGAAGAGTATGAGGACAACACAAAGGAATCAAATGTTTATAATGTGGAAAAAGAGTCTAGCCACGATGATTCGATGGGTGGcgtttttgcaacaaaaacaatcgAAGAGTATGAAGACTACACAAAAGAATCAAATGTGGATATCTTGGAAAAAGCTAGCCAGGATGGTAGTGTTTTTACAATACAAACAATAGAAGAGGACTTTAGACATAAGAAATCGCTAAATTGTTCAGTTTGTCACAAGTCCTTCGACCGGAATTACCGACTGAAAAGACATATGAGCGTCCACAACAAGACCGGAAAACCTTTTGAGTGCAAAAATTGTTCGAAGCGTTTTGCCTCCGAAAACCACTTAAGACGACACTTAATTGTCCACAGTGAAGTACTATCAGAAATGACCACTGCAATCAACCGGCCCGAAAGCTTTAAATGCGTAGAATGtgcaaaagaatttaaaaaacaggAATCCCTTTCATCTCACATGAGaactcataaaaatgtatccACAGCGAGAGAATATTCTTGTGAATTCTGCTCCAAAGTATTTTCGCGATTGAATTTGCTAACCAGGCACATAAAATGCCACGAACAAAGGAAACAGCATAAATGTAACATATGTGATAAAACTTTTGCTCTAAGCGCACAGCTCATAGATCACGTAAACAAGCACAACGGCGTCAAGCCTCATGTTTGTTCCATCTGCAAAAAAGGGTTTCAGCAGTCCTGTACACTCAAAGACCACCTTCGAGTTCACACCGGTGAGACGCCGTATTTGTGCTTTGAATGCGGGAAAGCGTTCAACAACGGAAGCAACTTGCGACAGCATTTGTTCAGGCATTCTGGTGAAAAGCCTTTTCATTGTCCTGAATGTCCTAGCCGCTTCACCTGCAAAGGAGGACTGAAATCGCACATGGTGACCCACTCCAAAGATAAGCCGCACCTGTGTAATGTTTGCGGCTCTGCATTTACCAAGCCATATTCCTTGGTGAAGCATAAACGAATTCACACTGGAGAAAAGCCATATGCTTGTGAAGTTTGTGATATGagattcAATTCTTCTGATCACGTAAAACGGCACATGAGGACACATACAGGAGAGAAACCATACAAGTGTAAGCACTGTGAACGGGCTTTTGCCCAGAGTAACGATCTAGTAAAGCACATGAGGGCACATGTTGGTGAAAGGACGTATCAGTGCCAGGATTGCTCGGCGGCCTTTCGATTACATTCAGAACTAAGAATTCATATTCAGAACCATTACCAGCAGCAAAAAATAATGGGACTGATACCAAATGCTAATGCAAACTCAGAAAACATTTCAGGTTCAAGTAATGATATTTCACCGGATTTCCATCAGGAGCATCTAGATTTAACAGAGAACTCGAGTAGTGTTCATTATCCTGCTGATGTCTCTTGCTCGAATTCTATTTTAACTGAAGAACtttaa
Protein Sequence: MYENISSVTICLGDGLPEEICQNCIDCLLAAHNFRELCITSDSKLKTEFSRRSNAIICQQNIKREEDETVNCINSILSEDEFSPKELNADSLEKEFSQDDSMVCGIFEMHTKEEYEDNTKESNVYNVEKESSHDDSMGGVFATKTIEEYEDYTKESNVDILEKASQDGSVFTIQTIEEDFRHKKSLNCSVCHKSFDRNYRLKRHMSVHNKTGKPFECKNCSKRFASENHLRRHLIVHSEVLSEMTTAINRPESFKCVECAKEFKKQESLSSHMRTHKNVSTAREYSCEFCSKVFSRLNLLTRHIKCHEQRKQHKCNICDKTFALSAQLIDHVNKHNGVKPHVCSICKKGFQQSCTLKDHLRVHTGETPYLCFECGKAFNNGSNLRQHLFRHSGEKPFHCPECPSRFTCKGGLKSHMVTHSKDKPHLCNVCGSAFTKPYSLVKHKRIHTGEKPYACEVCDMRFNSSDHVKRHMRTHTGEKPYKCKHCERAFAQSNDLVKHMRAHVGERTYQCQDCSAAFRLHSELRIHIQNHYQQQKIMGLIPNANANSENISGSSNDISPDFHQEHLDLTENSSSVHYPADVSCSNSILTEEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -