Lcyl026006.1
Basic Information
- Insect
- Leptogaster cylindrica
- Gene Symbol
- -
- Assembly
- GCA_963082835.1
- Location
- OY720109.1:23233993-23236715[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8e-05 0.0032 18.5 2.1 1 23 130 153 130 154 0.93 2 13 0.43 50 5.3 0.4 2 17 157 172 156 173 0.93 3 13 0.0013 0.15 13.3 0.6 1 19 219 237 219 239 0.97 4 13 3.6e-07 4.1e-05 24.5 2.0 2 23 327 348 326 348 0.98 5 13 4.5e-05 0.0052 17.9 5.8 2 23 355 376 354 376 0.96 6 13 8.5e-05 0.0099 17.0 0.9 1 20 382 401 382 402 0.95 7 13 1.4e-05 0.0016 19.5 3.3 3 23 417 437 416 437 0.98 8 13 0.00011 0.012 16.7 0.5 2 23 443 464 442 464 0.96 9 13 2.1e-06 0.00025 22.0 0.4 1 23 471 493 471 493 0.96 10 13 1.6e-06 0.00018 22.4 0.7 1 23 499 521 499 521 0.98 11 13 6.9e-07 7.9e-05 23.6 0.7 3 23 529 549 527 549 0.96 12 13 5.3e-06 0.00062 20.8 1.5 1 23 555 577 555 577 0.98 13 13 0.00079 0.091 13.9 1.0 1 23 582 605 582 605 0.97
Sequence Information
- Coding Sequence
- ATGGAACTGAAAAACAGTGATATGGACAAGAAAATTTGCAGAACCTGCTTATGCATAGACTCTGCTAGCAACCTTGTCGATATGTTCCCCAAGGAAGTTGATAACAACGATGAAATCCTTGTTTCTGAAATGATTGCAGCATGTACAAATTTTGTGATCACGAAAGAGGACGAATTGCCTAAGAACATTTGCTGGAAGTGTGtacaaaatgttaaaacagCTTACAACTTCAAAAAGCAGTGCGAAAAATCCGATACGCTCCTCAAGTCCATTGCGGAGAAGcataaacagaaaaaatctGAAACCGCGTGTTCCGATTCTGTTTTCATAACAGAATTGTGCATGAATCATACCGGATCAGGATTGCCATCGGATGTCCTCGTCTTCTTTCCTTGTGAGAAATGTGacaaaaagttttacaattttgataACTTGAAGGACCACATTGAAGATAGTCACCATCAAAGTAAATGCAGAATATGCCTGAAAACTTACACTAAACAACAGGAGTTAAAAGGAGTTGCCGCTGCTAGCAAAACAGCTTATTTCAAGGACAACAGTGATTTATGCAAAGCATGCTTTGATTTCTATTACGAACAAGGACCCAGTTACGAGGATGCGGAAAATAAGGGGGGATCAAATTCATCATGGCAATTTGCTTGCAAGATATGTTCTGAAACATTTGAAACCGCTGATTTGCTTAAGAATCATCCTTGTCGAGAGAATCACCAAAGAccaattaaattggaaaaatccAGATCTGATTCAAATTCGGATGCCAACAAGATTGAGATTTCCGATACAGAATCATTTTATGATGTCGACAATGCGGATGGAACGGAAGCTCAAGGAGAAGGTAGCAGCGAAGAAGACAGCAAACCGTTATCCGAACTGCAAGGGAATGCAATTAAGAAGGAGCTGAAGGATAGCAATggaaagaataataaaaaaataaaaaagaatgaaCGATCTAACAACAAATGCGATATTTGCGATAAAGTTTACTCCAGAGCAACACATCTCAGGCGTCATTTGCTCACGCACGCGCCACAGAAGCCACTCTCCTGTAAGATATGCAATAAAGGATTCACTAGATTAGATCATCTTAATGTCCACATGCATCATCACTCCGACACAAAACCATTTAATTGTGATATTTGTCAGCGAGGATTTGTACGAAATGAGCACTTAAGGAAGCACAAGGAATGCCGTCACGGCACTAAGACAAAAACACCGAAAAGTGAATTTTGCGACATATGCAAAAAGGGTTTTACCACCTCAAAGTATTTACATATTCACATGCGAAGCCACACAGATCGGATATGGAGCTGTAAATTGTGCTCCgagaaatttaaaactaaaccAGAATTGACCGCCCACGCCAAATCGCACGCTGCTAGTGAAAAACCGTTTCTGTGCTCCGAATGTGGATTGAGATTTGTACGGAATGATTATTTGGTGATACACATGAGACGACACAAAGGTGAAAAGCCGTACAAGTGTAAATTCTGTGGAAAAGGATTTCCAAGAGCAACAGATTTGACTGTTCACGAAAGGTATCACACTGGAGAGAAGACGCATTTGTGCACTATATGTGGCAAAGGATTCCAGCGCGCCTACAATTTGCTCGTTCATATGAGAGTTCACACTGGTGAACGTCCGTATTCCTGCCCGCATTGTACAAAGCGTTTTGCTCAGGGTAACGACTTGAAGGCTCATGTGCGTAGACACACTGGAGAGCGATTTAAATGCGACATCTGCGGAGATGGATTCATCCAGGGGTATCATTTAACACAGCACAAGAGAAATATTCATGGAATTGATACAAAGTCTCACATTCGGCGAGTGGAGAAATTCACGACGACCACTGAACAACTCAAACAAATGGAATCACTTCAAAGCCAGTTGAAACGTAGTCCTAGTCCAAATTCGtcgtttcaaaatatttctgaaaatgtgTCTGAAGATATTCCGCAAGTCGGAGTAATCAAAATTGAAGATGACGCCATTGATGTTGCTGAGgcGATTAGTTTAAGTGAAGAGCAAGCCGAACTGCTCGAACAGGGCCATGAAATAACTCTAGTTAAGGATAATGTAGCTATGATATCCTACTTCAACAGCGGCGAAACAAAGGTTGAGTTTGAAGGGAATagtgaataa
- Protein Sequence
- MELKNSDMDKKICRTCLCIDSASNLVDMFPKEVDNNDEILVSEMIAACTNFVITKEDELPKNICWKCVQNVKTAYNFKKQCEKSDTLLKSIAEKHKQKKSETACSDSVFITELCMNHTGSGLPSDVLVFFPCEKCDKKFYNFDNLKDHIEDSHHQSKCRICLKTYTKQQELKGVAAASKTAYFKDNSDLCKACFDFYYEQGPSYEDAENKGGSNSSWQFACKICSETFETADLLKNHPCRENHQRPIKLEKSRSDSNSDANKIEISDTESFYDVDNADGTEAQGEGSSEEDSKPLSELQGNAIKKELKDSNGKNNKKIKKNERSNNKCDICDKVYSRATHLRRHLLTHAPQKPLSCKICNKGFTRLDHLNVHMHHHSDTKPFNCDICQRGFVRNEHLRKHKECRHGTKTKTPKSEFCDICKKGFTTSKYLHIHMRSHTDRIWSCKLCSEKFKTKPELTAHAKSHAASEKPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHMRVHTGERPYSCPHCTKRFAQGNDLKAHVRRHTGERFKCDICGDGFIQGYHLTQHKRNIHGIDTKSHIRRVEKFTTTTEQLKQMESLQSQLKRSPSPNSSFQNISENVSEDIPQVGVIKIEDDAIDVAEAISLSEEQAELLEQGHEITLVKDNVAMISYFNSGETKVEFEGNSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -