Basic Information

Insect: Leptogaster cylindrica
Gene Symbol: -
Assembly: GCA_963082835.1
Location: OY720105.1:16646842-16650142[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.061 7.1 8.0 0.0 1 20 104 123 104 127 0.90

2 20 0.022 2.6 9.4 2.5 1 23 133 155 133 155 0.97

3 20 0.00016 0.018 16.1 0.2 2 23 161 182 161 182 0.98

4 20 0.0042 0.49 11.7 1.6 1 23 188 211 188 211 0.96

5 20 4.2e-06 0.00048 21.1 0.4 1 23 236 258 236 258 0.98

6 20 0.00032 0.037 15.2 2.9 1 23 264 286 264 286 0.95

7 20 2.5e-05 0.0029 18.7 0.6 1 23 292 315 292 315 0.96

8 20 0.0026 0.3 12.3 1.9 1 23 325 348 325 348 0.94

9 20 0.011 1.2 10.4 0.3 2 23 453 474 452 474 0.96

10 20 1.1e-06 0.00013 22.9 0.4 1 23 480 502 480 502 0.99

11 20 0.0026 0.3 12.3 4.6 1 23 513 535 513 535 0.98

12 20 1.2e-05 0.0014 19.7 0.3 1 23 541 563 541 563 0.98

13 20 0.00022 0.026 15.7 6.4 1 23 598 620 598 620 0.97

14 20 0.00095 0.11 13.7 2.9 1 23 626 648 626 648 0.98

15 20 0.00016 0.018 16.1 3.5 2 23 655 676 654 676 0.97

16 20 0.01 1.2 10.5 2.6 1 23 682 704 682 704 0.95

17 20 7.3e-08 8.4e-06 26.6 0.8 1 23 863 885 863 885 0.98

18 20 0.0001 0.012 16.7 1.8 1 23 891 913 891 913 0.98

19 20 3.8e-05 0.0044 18.1 0.4 1 23 920 942 920 942 0.97

20 20 0.0027 0.32 12.2 5.6 1 23 948 970 948 970 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.061	7.1	8.0	0.0	1	20	104	123	104	127	0.90
2	20	0.022	2.6	9.4	2.5	1	23	133	155	133	155	0.97
3	20	0.00016	0.018	16.1	0.2	2	23	161	182	161	182	0.98
4	20	0.0042	0.49	11.7	1.6	1	23	188	211	188	211	0.96
5	20	4.2e-06	0.00048	21.1	0.4	1	23	236	258	236	258	0.98
6	20	0.00032	0.037	15.2	2.9	1	23	264	286	264	286	0.95
7	20	2.5e-05	0.0029	18.7	0.6	1	23	292	315	292	315	0.96
8	20	0.0026	0.3	12.3	1.9	1	23	325	348	325	348	0.94
9	20	0.011	1.2	10.4	0.3	2	23	453	474	452	474	0.96
10	20	1.1e-06	0.00013	22.9	0.4	1	23	480	502	480	502	0.99
11	20	0.0026	0.3	12.3	4.6	1	23	513	535	513	535	0.98
12	20	1.2e-05	0.0014	19.7	0.3	1	23	541	563	541	563	0.98
13	20	0.00022	0.026	15.7	6.4	1	23	598	620	598	620	0.97
14	20	0.00095	0.11	13.7	2.9	1	23	626	648	626	648	0.98
15	20	0.00016	0.018	16.1	3.5	2	23	655	676	654	676	0.97
16	20	0.01	1.2	10.5	2.6	1	23	682	704	682	704	0.95
17	20	7.3e-08	8.4e-06	26.6	0.8	1	23	863	885	863	885	0.98
18	20	0.0001	0.012	16.7	1.8	1	23	891	913	891	913	0.98
19	20	3.8e-05	0.0044	18.1	0.4	1	23	920	942	920	942	0.97
20	20	0.0027	0.32	12.2	5.6	1	23	948	970	948	970	0.99

Sequence Information

Coding Sequence: ATGCAGGGCACATTACGCGGCAATTCGCAAACGGACTATGCAAAAACGCTTAGTTCATTGAATCAAATCGATAATCAGTTCCTCAATGCAAATAACTTCGTTGTGTTTCACGTAGCTAATCcccaaaatgaaagttttgcaGCTGGAACCATACAAAACGTAAATTGTGAAGATACTGAGCATCATAAACCATTCGCGCAGCAAGAAACAGTTGAAGGAGTAAGTCCTACAGttggaaaaatggaaaacccAAATAAACGAAAGAAATCAAAGCCGAATCGCATACGGCACATCCCGCCACCAAAAACATATCCCTGCGATTTGTGTGATGCCGTTTTTGGAGAGCCAGTTGAATTGAAGTATCACAAAGGCGCAGAGCATGTTTTGTCTAAACCATATCAATGTCAGCAGTGTGCAAAACAATTCAACTTTGAGAAAAACTTCACATTACATTTTGCTAGCCACACTTCTGCCCCGGCGACTTGTCCTGAATGTGGAACGGTTTTTCAGCGAATTTCTAGTTTTATTGGTCACTTAAATACCCATCAGACCAATGACAGCTTCCAGTGCCTTCATTGCAATGAGGAATTCGAATTCGAAGAGTACTATGAAAGGCATCTTCAGCAAGCACATACCGACTTGGCGATAACTTCCTTGGTTTTGAGCAGgaagCGAACAGTTAAGGCCGGAAAGAGCACGGGAAAATATTCCTGTAAAAGTTGCCCCAAGAGTTTTCCTAAGCCCAGTTTATTAAATCGTCATGAAATTACTCACACAAAGTTGAAAATCTTCGAGTGTCTGGAATGTCACCAGAAATTCAGTCAAAAGTCTTCGTTGGATCGACACAGTTTGCTTCATAATGGTACGAAGCGTTTTGATTGTCCCCAATGCACTTCAAGTTTTTCGCAACGGACAAATCTTATTACCCACATTAACCGCGTACATCCAGCTGCTAAGAACTTAGAAGGGAAGTATCCATGCAATAGATGCTCTTGTGTTTTTAGCAAACTAAATAGCCTCAGTCGGCACATTTCTGCCACACATTCGAGGGAAGTAGTAAAGTCGCCTCAAGAAACTGACATAATCTGTCTTCTGGAGCAGCTTAAGTGCCTGCGGGATGTGTGCTCTCCAGAACCAGCAAGCCCTTGGCAATCGACTTATGAGAAAGAAACTCAGGAGCCCATAGTAGAAATAGCACCCAACTACTCTGCGCTCcaaattgaagaaaacaaatgcGAGGAAATCAAGAACACTCCCAAAGAAAGTATAATTAATCTAGTCGATTACAATTATCCCAACAAGGAACGTTCCAATAGGTTGGTGAAGGAAGTTGTTATTGATTCAATTAAATGGCTGGAGTGTCTCAATTGTTCCAAGAGATTTCAGAAACCTTTGGACATTTTAAGGCATATAAGGGTCCATACTAAAGAGAAACCGTACGAGTGCGAGATGTGTGGACGGATGTTTGCGTTGAAGTACACTTTGCAAATGCACATGCGTATTCACAAAAAGGAGTCACCCGGAATCAGCAAAGTCTTCAAATGCAGTATGTGTGAGAAACGCTTCGATTCACGAAGGAGCTTGGATTTGCACCATAAAAATCACAACAACTACAAGCCATACATTTGTcctgtttgttttaaaacctTCGGCACAAGCAATAATTTGCGAATTCATGAAAAAATCCACAATCCCAAGGATCCTGTAGAAGAAGAATTAAAGCGGCAGCTTCTTCCaccaattaatgaaaacagcACGAAACTCCAAGTAGAAGATAAAGATAGGAGAAATCACCAATGCTCCAAGTGTGGGTTAAAGTTTAAGAAACTATCCCATTTGAAACAGCACGAAAACAGCCACTTGGGTCTGAAGCCGTACAACTGTACCACATGTCAGCGCCATTTTACAACTATCAGCTCTCTTGGACTACATCAAAAAATTCATCTTGGCCACAAGACCAAGCAATGTGATAAATGTCCAGCGAAATTTTCGACCAACGGCTGCTTGCGTCGCCATCAACTCAAACACTCCTCTGTCAGAAACTTTCTTTGTCCTTACTGCTTGAAGtcgtttaaaattaaaagcgctTGCAAACGCCATATAGGAACCCACGTTAAGGAAGTCATGGAAAGCGTTGAAGTAGAGAAAGTAAATGAGAATATAATCAGAGGAACTGGTTTTGCAAACGTTGACGAACTTCTTCCTGAGTACACTCTGAGTGCTCAAACTACAAGTACAACTGTTGATTGTGTTGGCTCCAATGAACTTGTATATGTTGACCTAAGTAAACTTCTAACAGAAACTgtagaaaacgaaaatatatcGCATGCAGAAAAAAGCGGACCCGCCATGGAACATGGGCAACAATTACGATTCATAAACATCAAAGATTTGTCCAACTATCAAAGtgatattacaaaaaacataGTTGTTGTGTCTCATGAAAGGTCTTACGATATTATTGAAGACACCCCTGAGACATTCCAATTGGATGAATGTCTCAATGGCGAAGAGTTTCTGATTCGAGATACTGGATCAAAACAGgcagaaattgaaaaggaagaAAACATCCAGAAGAAAATAACTCATGTGTGCGACATTTGCGGAAAAGCTTTCAAGAAGCCAATTGATTTGAGGCGCCACTTAAGAACACATACGAAAGAAAAACCCTTTCGTTGTGATATTTGTTCCAGGACATTCAGCTTGAAAAGCACTTTAGACAGTCATAAGTTGACCCATCTTAAAGACAGACCCTCATTTGATTGCCACGTATGCGGAAGAAGTTATGCAACGAAAGCGGTCCTCAATGTTCATGTGCGTCTGCATACGGGAGAAAAACCATACAAGTGCGATCTCTGCTCAAAGAACTTCCGCACGTACGGTCACAGAAAGAGCCACTacaaaattcactcaaaagaaaaattaatgactAAGAAGAGAAAGTAG
Protein Sequence: MQGTLRGNSQTDYAKTLSSLNQIDNQFLNANNFVVFHVANPQNESFAAGTIQNVNCEDTEHHKPFAQQETVEGVSPTVGKMENPNKRKKSKPNRIRHIPPPKTYPCDLCDAVFGEPVELKYHKGAEHVLSKPYQCQQCAKQFNFEKNFTLHFASHTSAPATCPECGTVFQRISSFIGHLNTHQTNDSFQCLHCNEEFEFEEYYERHLQQAHTDLAITSLVLSRKRTVKAGKSTGKYSCKSCPKSFPKPSLLNRHEITHTKLKIFECLECHQKFSQKSSLDRHSLLHNGTKRFDCPQCTSSFSQRTNLITHINRVHPAAKNLEGKYPCNRCSCVFSKLNSLSRHISATHSREVVKSPQETDIICLLEQLKCLRDVCSPEPASPWQSTYEKETQEPIVEIAPNYSALQIEENKCEEIKNTPKESIINLVDYNYPNKERSNRLVKEVVIDSIKWLECLNCSKRFQKPLDILRHIRVHTKEKPYECEMCGRMFALKYTLQMHMRIHKKESPGISKVFKCSMCEKRFDSRRSLDLHHKNHNNYKPYICPVCFKTFGTSNNLRIHEKIHNPKDPVEEELKRQLLPPINENSTKLQVEDKDRRNHQCSKCGLKFKKLSHLKQHENSHLGLKPYNCTTCQRHFTTISSLGLHQKIHLGHKTKQCDKCPAKFSTNGCLRRHQLKHSSVRNFLCPYCLKSFKIKSACKRHIGTHVKEVMESVEVEKVNENIIRGTGFANVDELLPEYTLSAQTTSTTVDCVGSNELVYVDLSKLLTETVENENISHAEKSGPAMEHGQQLRFINIKDLSNYQSDITKNIVVVSHERSYDIIEDTPETFQLDECLNGEEFLIRDTGSKQAEIEKEENIQKKITHVCDICGKAFKKPIDLRRHLRTHTKEKPFRCDICSRTFSLKSTLDSHKLTHLKDRPSFDCHVCGRSYATKAVLNVHVRLHTGEKPYKCDLCSKNFRTYGHRKSHYKIHSKEKLMTKKRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -