Basic Information

Insect: Leptogaster cylindrica
Gene Symbol: -
Assembly: GCA_963082835.1
Location: OY720105.1:7832380-7836938[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.6e-05 0.0053 17.8 2.7 1 23 418 440 418 440 0.97

2 18 1.6e-05 0.0018 19.3 0.4 1 23 446 468 446 468 0.97

3 18 6.2e-05 0.0072 17.4 1.7 1 23 474 496 474 496 0.98

4 18 1.8e-05 0.0021 19.1 3.1 1 23 502 524 502 524 0.97

5 18 0.00021 0.024 15.7 4.9 1 23 530 552 530 552 0.98

6 18 7.6e-05 0.0088 17.1 5.7 1 23 558 580 558 580 0.97

7 18 3.6e-07 4.1e-05 24.5 4.3 1 23 586 608 586 608 0.98

8 18 1.3e-07 1.5e-05 25.8 2.4 1 23 614 636 614 636 0.97

9 18 0.00018 0.021 16.0 5.7 1 23 642 664 642 664 0.97

10 18 7.1e-05 0.0082 17.2 6.4 1 23 670 692 670 692 0.98

11 18 1.9e-05 0.0022 19.0 4.7 1 23 698 720 698 720 0.98

12 18 4.5e-05 0.0052 17.9 8.3 1 23 726 748 726 748 0.98

13 18 3.7e-05 0.0043 18.1 7.8 1 23 754 776 754 776 0.97

14 18 8e-07 9.2e-05 23.4 7.7 1 23 782 804 782 804 0.98

15 18 0.00025 0.029 15.5 9.5 1 23 810 833 810 833 0.95

16 18 0.00021 0.024 15.8 0.5 1 23 839 861 839 861 0.97

17 18 0.00091 0.1 13.8 4.3 1 23 871 893 871 893 0.99

18 18 2.3e-05 0.0027 18.8 2.4 3 23 901 922 899 922 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.6e-05	0.0053	17.8	2.7	1	23	418	440	418	440	0.97
2	18	1.6e-05	0.0018	19.3	0.4	1	23	446	468	446	468	0.97
3	18	6.2e-05	0.0072	17.4	1.7	1	23	474	496	474	496	0.98
4	18	1.8e-05	0.0021	19.1	3.1	1	23	502	524	502	524	0.97
5	18	0.00021	0.024	15.7	4.9	1	23	530	552	530	552	0.98
6	18	7.6e-05	0.0088	17.1	5.7	1	23	558	580	558	580	0.97
7	18	3.6e-07	4.1e-05	24.5	4.3	1	23	586	608	586	608	0.98
8	18	1.3e-07	1.5e-05	25.8	2.4	1	23	614	636	614	636	0.97
9	18	0.00018	0.021	16.0	5.7	1	23	642	664	642	664	0.97
10	18	7.1e-05	0.0082	17.2	6.4	1	23	670	692	670	692	0.98
11	18	1.9e-05	0.0022	19.0	4.7	1	23	698	720	698	720	0.98
12	18	4.5e-05	0.0052	17.9	8.3	1	23	726	748	726	748	0.98
13	18	3.7e-05	0.0043	18.1	7.8	1	23	754	776	754	776	0.97
14	18	8e-07	9.2e-05	23.4	7.7	1	23	782	804	782	804	0.98
15	18	0.00025	0.029	15.5	9.5	1	23	810	833	810	833	0.95
16	18	0.00021	0.024	15.8	0.5	1	23	839	861	839	861	0.97
17	18	0.00091	0.1	13.8	4.3	1	23	871	893	871	893	0.99
18	18	2.3e-05	0.0027	18.8	2.4	3	23	901	922	899	922	0.95

Sequence Information

Coding Sequence: atgaatGCGGATCACTCAGTGCCGACTGAGGCGACCAGTCCTAATGACTCGCAAAGGCAACAGCAAAATCGACATACACCGccgcagcagcaacaacagcaTCAACACCATCAGCAGCAACACCAGATACCCCGACACCCCCATCAGCAGCAGATTGATGAACAGCATCAACAAgctcaacaacagcaacatgAAAACCGTGCTCTTAGTGGCGTTATACAGCCCGTGAGTGAAGCAGATATAAAGCATCCATTACCGCCACCCAATGCACCTCATCTCGGAAAATATTGGGTTGTCACTAATTTATTTCAAGGTTCTGGTCAAAATACATACACACTAGGATCACCGCCAGTGACATCAGTTCCTTCATTACCACCTCCCATTTCATCAACACACACTTCTACGGCAGCTTCTATGATTAAAATTGACACCATTAAACAAGAAGAGAGTCATTTGCGACATTCACAACAGCCTCAGCAGCAGCAAGTAGTTGCTGTTAGTTCTAGTTCAATACAAATACCTAACCCAATGATCAATGTAACAAGTCAAAGCCAACAACAGCTTCCGAATGGGACAATAATATCTACTTCAGCGCCGCCTGAACAAATTCAGGTATCAGTGAATCCTGAAAATAGCCTTATGGTTATGGATGCttcaacaaaacaagaaaaaatgcCTAATATGAATACACCTAACATTCACAATGCGGAACCGATGCAAGTTGATAGGCCAATGTCTCACAATATGCAAGACACAGTTAAGGAGGAAAAGCCATTTTCTAACTGTAAGCCTCCCATTATTCAACAAATACATCCTCATCATTTAACTGCGGATACAAAAATGCATGTACCTCACTTGCTGGATGTACGTAATCCCGATGGTTCTATCGTAAAATTGCCTCCACCATCAGAGCAAGAACTCGGAAAATCGCTCGGTGTGGAGATGTACAAGGTGAACATTGAAGATCTAAGTCAATTTTTGTCATATCATGAAGTGTTCGGGAAAATACATGGAGATGTTATGAATCATCAAATCTCCCATTCGAGCACTCATCCAACTAATACCGTCACAAACACGACTGGCATACCAACTTCGACCAATGGTAATCCTGTAATTACCAACATAACAACGGCAACCGGAGAGCTAATCATGCCGAAAATGGAAGTTGGTCAAATCACTGGATTGAATTCAACTCATGGTGCTAATAATTCGCATACGATGGGTGATGGATCTAGTATAACTCCTGCCACACATAGCTGCGACATCTGCGGAAAGATGTTTCAGTTCAGATACCAACTAATAGTACATCGCCGTTATCACAGCGAAAGAAAACCTTTTAATTGTCAAGTGTGTGGACAAGGATTCACATCCTCCCAAGATTTAACCCGGCATGGTAAAATTCACATTGGGGGTCCAATGTTCACCTGTACGGTgtgttttcatgtttttgcAAATGATGCCAGTCTAGAGAGACACATGAAGCGTCATTCGACCGACAAACCATTTGCTTGCACAATTTGTCAGAAAACTTTTGCCAGAAAGGAGCATCTGGATAATCATTTCCGAAGTCATACTGGTGAAACACCATTCCGTTGCCAGTTCTGTGCTAAAACCTTTACAAGAAAAGAGCACATGGTCAATCATGTAAGAAAACACACAGGAGAAACTCCTCATAGATGTGACATTTGCAAGAAATCCTTTACTCGAAAGGAGCACTATGTTAATCATTACATGTGGCACACAGGAGAAACACCTCATCAGTGTGAGGTTTGTGGCAAGAAGTATACGAGGAAGGAGCATCTTGCGAATCATATGAGATCTCACACGAATGATACTCCCTTCCGTTGTGAAATCTGTGGCAAGAGTTTCAGCAGGAAGGAGCACTTTACCAATCACATTTTGTGGCATACAGGAGAAACACCTCATCGATGTGATTTTTGCGCAAAAACTTTCACAAGAAAGGAACATCTATTGAATCACGTGAGGCAGCACACAGGCGAGTCGCCGCATCGTTGCACGTATTGTTTGAAAACGTTTACACGCAAGGAGCACCTAGTGAACCATGTCCGTCAGCACACTGGGGAAACTCCATTCAAATGCACATTTTGTACGAAAGCATTTACTAGAAAGGATCACATGGTTAACCATATTCGGCAACATACTGGAGAATCACCGCACAAATGTACATTTTGTACCAAGACTTTTACAAGAAAAGAACATCTGACTAACCACGTTCGGCAACATACCGGTGAATCTCCACATAGGTGCTCATTTTGTAAGAAAACATTTACTCGGAAGGAGCATCTGACCAATCACGTTCGCCTGCACACTGGCGATTCACCGCATAAATGTGAATACTGTCAAAAAACCTTCACGAGAAAGGAACATTTAAACAATCACATGAGGCAACACTCCAGCGATAATCCGCACTGCTGTAATGTGTGTAATAAGCCATTTACAAGAAAAGAACACTTGATTAATCATATGTCTCGGTGCCACACTGGAGACCGGCCATTTGCGTGTGAAACATGCGGCAAGTCTTTCCCACTTAAAGGGAATTTGCTTTTCCATCAAAGGAGTCATACCAAGGGGCAAGATGTTGAGAGACCATTTAGGTGTGATAAATGTCCTAAAGATTTTATCTGCAAAggacATCTGGTGTCGCATATGCGATCGCATTCGGGAGAAAAACCACATTTGTGCACATTATGCAGCAAGTCTTTCGTTGAAAAAGGCAATCTTAAGCGTCATATTAAGATGAATCATCCGAATGTTATGTTGCCACCGCCAGCAACAATGACTGCAACAATTAAAACCGAATCAATTCCTACGAGCAGCAGCTCGCCacaatttattaatgaaagaattcaacttttaacTAAAGCAAATCTTCTACCTATTAATAATTTAGCAACACATCAACCCCCCACCATGCACACAATTCAGCAGATTACTTCATCTGCAAGTAGCTCGGCGGGGGGTAACGGTGGCAACAATACATCGCTTCCAGGTGGTCTTGTGCCAATTGTTACATCCACGATCACATCACACGCCAgtcaacaacagcagcaacaacaacaacaacaacaacaacagcagcagcagcaacaacaacaacagcaacatgTAGCGTCACAGATGCATCAGCCTCCGCCCCCACATCATCAGCAGCAACCTAACACAAATCCGTCTGACCAGCAGCAACCTCCGCCATCATCTGTGCCGATTACAATTATTCAAACAGGTGATCCCACTGCAATAGCTAGAGCTGCAATTCAACTGCAGCATGCGATTCCAACAAACGTAGAACAACATCCAGTAGtatattga
Protein Sequence: MNADHSVPTEATSPNDSQRQQQNRHTPPQQQQQHQHHQQQHQIPRHPHQQQIDEQHQQAQQQQHENRALSGVIQPVSEADIKHPLPPPNAPHLGKYWVVTNLFQGSGQNTYTLGSPPVTSVPSLPPPISSTHTSTAASMIKIDTIKQEESHLRHSQQPQQQQVVAVSSSSIQIPNPMINVTSQSQQQLPNGTIISTSAPPEQIQVSVNPENSLMVMDASTKQEKMPNMNTPNIHNAEPMQVDRPMSHNMQDTVKEEKPFSNCKPPIIQQIHPHHLTADTKMHVPHLLDVRNPDGSIVKLPPPSEQELGKSLGVEMYKVNIEDLSQFLSYHEVFGKIHGDVMNHQISHSSTHPTNTVTNTTGIPTSTNGNPVITNITTATGELIMPKMEVGQITGLNSTHGANNSHTMGDGSSITPATHSCDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTSSQDLTRHGKIHIGGPMFTCTVCFHVFANDASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGETPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHVRQHTGETPFKCTFCTKAFTRKDHMVNHIRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCSFCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQDVERPFRCDKCPKDFICKGHLVSHMRSHSGEKPHLCTLCSKSFVEKGNLKRHIKMNHPNVMLPPPATMTATIKTESIPTSSSSPQFINERIQLLTKANLLPINNLATHQPPTMHTIQQITSSASSSAGGNGGNNTSLPGGLVPIVTSTITSHASQQQQQQQQQQQQQQQQQQQQQQHVASQMHQPPPPHHQQQPNTNPSDQQQPPPSSVPITIIQTGDPTAIARAAIQLQHAIPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00628542;
90% Identity: iTF_01049832;
80% Identity: -