Lcyl016727.1
Basic Information
- Insect
- Leptogaster cylindrica
- Gene Symbol
- -
- Assembly
- GCA_963082835.1
- Location
- OY720107.1:22618605-22620566[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.7e-10 4e-07 30.3 0.1 1 38 15 53 15 58 0.94
Sequence Information
- Coding Sequence
- ATGGTTCGGtcatataaaagaaaaacagaaaggGGTTCATGGAGTGAAGAAGCTATGAAAAATGCTGTCATGGAAGTAATCAACGGCCGAATGGGTTATTATCGAGCAGCAACGGCATTTCAGGTGCCGCAAACAACTCTTGAAcgtaaagtaaaaaaattcaaagcagGAACTAATGAAGTTGACAAAATTGAATCTTTTGATGTTAAGGGTAAACTTGGACCTTACAAAAGTGTATTTAACCCAGAAGAAGAACAAGaattagttaattatattaagaCTATGGAAAGCCGTTTGTTTGGTTTGACTGCTAATGATGTAAAGCGGCTGGCATACCAGTTAGCTGTGAGAAATAACAAGCAGCATAATTTTAACCAGACCAAAGAATCAGCTGGAAAGGATTGGCTTAGGGGATTTTTGCTAAGAAACCCAAGTTTATCATTTAGGAAACCTGAGCAAACCTCCGCAGCTAGGGCAATGgcttttaacaaaattaatatatccAACTTCTTTGGTTTATTAGGGGAACTATACGACCAGCACCAATTTACACTAGATAGAATCTACAATTGCGATGAAAGTGGGATCTCTGCTGTTTCAAAGAACACTTCCAAGATATTGGCATCAAAAGGGAAAAAACAAGTAGGGTCATTATCATCTGACGAAAGAGGAAAAACTGTCTCTGTTGAGTTTTGCATGAGCGCTGCTGGAAGTTTTATGCCACCCATGTTAGTGTATCCTCGCCAGCGAATGAAGCCAGAACTACTCAGCAATTGTTCACCTGGAATGTGGGCGGAATGTCATGTCTCTGGTTGGatgcaaaaaaacatttttgagaaATGGTTTgacaaattcattgaattttctaAAGCAACCAAGGAGAAACcagttttgttattgttggaTGGACACTCAACGCATATACAGAGCTTGGCGATAATTGACAAAGCTAGAGCGAACGGAGTAATCATCCTCTGTTTCCCACCTCATTGTACTCACAAGCTTCAGCCTCTAGACGTTTCATTCATGAAGCCTCTAAGCACGTACTATGATCAAGAGTTGACAAACTGGCTAAGATCAAATCCTGGTAAAATTGTTACCATGTTTCAGATTGCTGGGATTTTGGGCAAAGCCTTTCTCAGGGCTGCCACCATGTTGACTGCCATAAATGGTTTCAAAAATACAGGAATTTGCCCTTACGAACCAAACATCTTCCCAGATTCAGTGTTTGAAGCTTCTGCCACCACAGACACTCCTTTAGCTACAAGTGAGGCTGCCAACGTTACTGTCAATAGTGACCAAGGAAAAGCTTCAGATGGCTCGCATCAGCAGGTTATACCAGAGGCAAGCAGTCCTGTCAACCATGCCGGTCCTAAAGAGCAAGATGCGCTTGCTGTATGCCTACCTGGGTGCTCACATTGGAATGATAGTAACCCCAATAACCACACCACAGAAAAACAAGCTCCCAGGAACAATAACAATCAATTAGGATCCTTTGCTGTTTCGCCTGAACAAATTGTTCCTGTTCCTCATGTCGGAAGGAAAAATATCCGAAAATCAGGccacaaaaaaggaaaaactgtTATTGTAACTAGCTCCCCCTACAAAAAAGAGCTTCTGGAGAGTGCAAATAAAGTTAAGCCtgacaaaaaaaagaaccaaGAAGGAAAGGATGTTCgtaagaaaattgttaagcAATCCCGTTTTGTTCATAAAGGAAAAAgtgggaaaaataaaaaaccaatgaCAAACCTGCCAAAGAagatcaaaaaagaaaaaaacgaagATGAAAGCACATCAGAAGAAGATGACACTGCGTGCCTGTATTGTGGCTATTTCTACTCTCAGTCAACAGAAGGATGGGTGTCATGCGTCTCTTGCAAAAAGTGGGCTCACTGTTCCTGTGCGGGAGAAGAGGACGAGGATGCCGAGGCACATCATATCTGTGAATTTTGCTTATAA
- Protein Sequence
- MVRSYKRKTERGSWSEEAMKNAVMEVINGRMGYYRAATAFQVPQTTLERKVKKFKAGTNEVDKIESFDVKGKLGPYKSVFNPEEEQELVNYIKTMESRLFGLTANDVKRLAYQLAVRNNKQHNFNQTKESAGKDWLRGFLLRNPSLSFRKPEQTSAARAMAFNKINISNFFGLLGELYDQHQFTLDRIYNCDESGISAVSKNTSKILASKGKKQVGSLSSDERGKTVSVEFCMSAAGSFMPPMLVYPRQRMKPELLSNCSPGMWAECHVSGWMQKNIFEKWFDKFIEFSKATKEKPVLLLLDGHSTHIQSLAIIDKARANGVIILCFPPHCTHKLQPLDVSFMKPLSTYYDQELTNWLRSNPGKIVTMFQIAGILGKAFLRAATMLTAINGFKNTGICPYEPNIFPDSVFEASATTDTPLATSEAANVTVNSDQGKASDGSHQQVIPEASSPVNHAGPKEQDALAVCLPGCSHWNDSNPNNHTTEKQAPRNNNNQLGSFAVSPEQIVPVPHVGRKNIRKSGHKKGKTVIVTSSPYKKELLESANKVKPDKKKNQEGKDVRKKIVKQSRFVHKGKSGKNKKPMTNLPKKIKKEKNEDESTSEEDDTACLYCGYFYSQSTEGWVSCVSCKKWAHCSCAGEEDEDAEAHHICEFCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00876995;
- 90% Identity
- iTF_00876995;
- 80% Identity
- -