Lcyl017135.1
Basic Information
- Insect
- Leptogaster cylindrica
- Gene Symbol
- -
- Assembly
- GCA_963082835.1
- Location
- OY720107.1:24168146-24173398[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-08 9.9e-06 25.9 0.0 2 39 16 54 15 59 0.91 2 2 0.0045 2.3 8.7 0.2 18 38 206 226 204 230 0.93
Sequence Information
- Coding Sequence
- ATGGTTCGGtcaaataaaaggaaaacagaAAGGGCTTCAGGGAGTGAAGAAGCTATGAAAAATGCTGACACGGAAGTAATCAACGGCCGAATGGGTTATTATAGAGCAGCAACGGCATTTCAGGTGCCGCAAACAACTCTTGAACGCAaggtaaaaaaattcaaagcagaaactaatgaaaaaattgaatcttTTGATGTTAAAGGTCAACTTGGACCTTATAAAAGTGTATTTAGCCCAGAAGAAGAACAAGAATTAGTTAATTATATATTAGTGCAGTTGCCAAGATCAGCAGAACTGTGTCACACTTCAGTAAGAGAGGAACCTGAAGTGGCAAGTCTTCTTTCTTGGGAATCAGACACACCCCAATCAACACAAGGGGAAGAAAAGAGGCCTGCTCCATCTAATGAAATATTGATGCCAAATTATATCCAAGCACCCAGTACCCAACGCCAATGTTTCTTTTCAGATTGCAATGAAACAGAACGACTTTTAGTTCCATCAACACTACGTGTAAGCATCATGGTACGACATTATCTGAAAAAAAGGATCTTCAATCCAGTCGACTATGATAAGTTGGTCAACGGCATTAAATTGGTGAAAATCGACAGAAAATCACAACGTGCAGCTGCCGCTAGCTATGGACTCGCTTTTAAAACTTTGAATCGCTACATTCAAAAAGTAAAAGGGAAATTGCCCGATGTCGCTAAAGTTCAAATAGCTCTCTCGGTACAAAGCCGGTATTTACTGACATCCCAGAGCAGGCGTTGTTGCAGTACATCATCAGATGTTCAAAGTATAATTATGGTCTAA
- Protein Sequence
- MVRSNKRKTERASGSEEAMKNADTEVINGRMGYYRAATAFQVPQTTLERKVKKFKAETNEKIESFDVKGQLGPYKSVFSPEEEQELVNYILVQLPRSAELCHTSVREEPEVASLLSWESDTPQSTQGEEKRPAPSNEILMPNYIQAPSTQRQCFFSDCNETERLLVPSTLRVSIMVRHYLKKRIFNPVDYDKLVNGIKLVKIDRKSQRAAAASYGLAFKTLNRYIQKVKGKLPDVAKVQIALSVQSRYLLTSQSRRCCSTSSDVQSIIMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -