Lcyl006106.1
Basic Information
- Insect
- Leptogaster cylindrica
- Gene Symbol
- -
- Assembly
- GCA_963082835.1
- Location
- OY720105.1:36685187-36685687[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-11 9.6e-09 35.5 0.0 1 40 18 58 18 60 0.96 2 2 6.8 3.5e+03 -1.5 0.0 25 36 93 105 90 107 0.79
Sequence Information
- Coding Sequence
- ATGCCacgaaaatatgtaaaaaaggTTGGGGCTCGCTCCTATAGGGACTACACTCCTGAGCATCTCGAAGAAGCAGCGAATATGGTGCTAGCTAAGCAGTTGTCTCTTCGAGAAGCTTCTACCATATATAACATCCACAAAAATACCATATGGCTCAAGACAAAAAAAGTGCGAAAGAAACCCGATACTGCTATTGCGACAAGATCACCAGGTGGTCAACCAGTATTTGCAGCACAAGAAGAGGACCGTTTTATAGCTCATACGATTGCAATGTCTACATTTGGATTCCCAATGTCTACTTTCGACTTGAGATGTACAGTGAAAGCTTACTTAGATAGAATAGGaagaattgttaaaaaatttaagaataattttccTGGCAGAGATTGGGCAGAAAGTTTGATGTATTGCAACAGGCAAACTGTGTCTCAGAGAACACCAAAAAACATAACACATGCGAGAGCTGCTACCAATGAAgaaatccttgaaatttttttttaa
- Protein Sequence
- MPRKYVKKVGARSYRDYTPEHLEEAANMVLAKQLSLREASTIYNIHKNTIWLKTKKVRKKPDTAIATRSPGGQPVFAAQEEDRFIAHTIAMSTFGFPMSTFDLRCTVKAYLDRIGRIVKKFKNNFPGRDWAESLMYCNRQTVSQRTPKNITHARAATNEEILEIFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -