Lcyl006702.1
Basic Information
- Insect
- Leptogaster cylindrica
- Gene Symbol
- bab1
- Assembly
- GCA_963082835.1
- Location
- OY720105.1:40361724-40363768[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-11 2e-08 34.5 0.0 4 45 360 401 357 401 0.92 2 2 0.15 79 3.8 1.1 4 20 493 508 492 508 0.93
Sequence Information
- Coding Sequence
- atggGCAGCAGCGAAGGACAAACCTACTGTTTGCGATGGAACAATCACAAGTCGAATTTGGTGGAGATTTTGGATGCTCTGATAAAGATGGAGAGTTATGTCGATTGCACAATAGTCGTTGACGATCAAGTGCAATTCAAGGCGCACAGAGTAGTTCTAGCAGCGAACTCGCCATACTTTCAGTCAATACTGCAAGATGTCCCAATGGATCACTGCAGCATCCTGTTTCCGGGTGTTCAGGCATTTGAAATGCGCGCCCTTTTAGAGTACATGTACACGGGCGAAGTGAACGTAACGCAAAgtcaaattccaaaaattatgaaaattgctGAGCAATTGGAAGTGAAGGGTTTGTTTGACATGACTGATTTGAAggagaaattcaataaatttgaagaGCCTCCAACAACGCATTATCCTTCACCTACAGCAGTACCACCCGCACCGGCATTTTCATCCAAGGAGGGTGAACAGCAATCATCACCGGTAATTACCACCTCAACGAATATCACGCCGGCACAGAGCAGCAGTTCACCCCCGTACTCATACAAGTCTCCGTATTCGAGTCTGTACAGTAAGAGTTTAGGACCTTCTACCTCAGATCGTCATGCGCAGTGGTCGAACATGCCCCCGCATATGCCACCGTCTATTCCTAGAGCTGCTGCTGCAGCTGCAATGCTGAGTTCTGTATATGATAGTGCCGGTGACATGAATCCTTTGAAGAGGAAGAAACTTTCCTCCATTTCTAGTATGCTGCAATATCCCACGACAAAAGATACACCGATTTTGAGAAACGTTTTGGCACAGACTCATGCTGCAGACTCATCACAGCCAATGCCGTTGGTTTGCCAGCCACTGAAAACGGAGAGGAACGACAGGAATGAGAAACAAGGACTAGACAGCTGCAATGGATCGGAATACACACCGGACAAgTATGACGAACCTCACTCCCCGTACCTTGAGGATGACGGCTTGGACTGTCCTCCATCGTACATGGGAGACTCGCGCATGCAACAACGCTCAACaccacaacaacaaaagcCCGAATGGAAGCGATACAAGCAGTATACCCGAAGTGATATTCTGTCGGCGATTGAATGTGTTCGAAATGGTATGACCGCCTTGCAAGCATCTCGGAAATTCGGTGTGCCCTCAAGGACACTGTACGACAAGGTGAAAAAGTTAGGTATAACCACTGGACGACCAATGAACAGAACCATCAAACGAAGTCCCAGTACAGGTGGAGGCTCGTCTGGATTTCAGTTCAACATAAGTGGAAATGGCCATCCATATGGGTCGAGTGAAACAATGATCTCTCAAGTTCATGACTCCATGGATCGAGACAAGGATCGGGAGCATCATATCCCGCCAACGATCCCACATCCTGCGGCAGCATTACTGGATCCGAACTTCTTGCAACAGGCGTTCGAAGCTCGTGGTGGAGATATTGCGGGGCGAGAGGCTTTACATGCAATGGCACTTGCCGCCGCTGCACATGCCGCCGTGAATGGTATGTCTACAAGTCCTGGCACTAATGGTACAGCCAGATCACCAAGTCCATGCGTTTTTAAGTACCAAAAACCACAAAGTCCACACATTAGCCACGAAAGATTATCCGACCCGGAACGTGAACGTGAACCGATGGAAGAGGACGAGGACAAAGTGGAAGACTTGTCCATGTCGCGAAAAGAAATGTCATCACCTCCTCCATTGCCTCATCATTCCTATCAGCATCTTCATCAGCAACAGCAGTCACCGTCACCGCAACAGATGCAACAGACCGGAGAGCAACCGCAACAAAGTCAACATCAACACCAGAAACCTCATCAACAAACTGGCGTTATTGTGCCGCCGATGACGAAAATTCCGGCGAAAAGTGGCGACGATTACGGAAGCTTCGACTGCAAGAGGGAGTGCATCACCGAAGACTCTAGGGACTAG
- Protein Sequence
- MGSSEGQTYCLRWNNHKSNLVEILDALIKMESYVDCTIVVDDQVQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVQAFEMRALLEYMYTGEVNVTQSQIPKIMKIAEQLEVKGLFDMTDLKEKFNKFEEPPTTHYPSPTAVPPAPAFSSKEGEQQSSPVITTSTNITPAQSSSSPPYSYKSPYSSLYSKSLGPSTSDRHAQWSNMPPHMPPSIPRAAAAAAMLSSVYDSAGDMNPLKRKKLSSISSMLQYPTTKDTPILRNVLAQTHAADSSQPMPLVCQPLKTERNDRNEKQGLDSCNGSEYTPDKYDEPHSPYLEDDGLDCPPSYMGDSRMQQRSTPQQQKPEWKRYKQYTRSDILSAIECVRNGMTALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTIKRSPSTGGGSSGFQFNISGNGHPYGSSETMISQVHDSMDRDKDREHHIPPTIPHPAAALLDPNFLQQAFEARGGDIAGREALHAMALAAAAHAAVNGMSTSPGTNGTARSPSPCVFKYQKPQSPHISHERLSDPEREREPMEEDEDKVEDLSMSRKEMSSPPPLPHHSYQHLHQQQQSPSPQQMQQTGEQPQQSQHQHQKPHQQTGVIVPPMTKIPAKSGDDYGSFDCKRECITEDSRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00877197;
- 90% Identity
- iTF_00877197;
- 80% Identity
- iTF_00877197;