Lcyl010520.1
Basic Information
- Insect
- Leptogaster cylindrica
- Gene Symbol
- lolal
- Assembly
- GCA_963082835.1
- Location
- OY720106.1:19352638-19377947[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-10 5.4e-08 33.1 0.0 1 38 494 532 494 537 0.90 2 4 3e-13 1.5e-10 41.3 0.1 2 39 549 586 548 589 0.94 3 4 2.9e-17 1.5e-14 54.1 0.0 1 45 603 648 603 648 0.98 4 4 1.4e-17 7.1e-15 55.1 0.0 1 43 655 698 655 699 0.96
Sequence Information
- Coding Sequence
- ATGGCCGTTAGAAGTCATCAATATTTCAGTCTGAGGTGGAATAATTATCAGAGCACTATGACCTCAGTGTTCCAACAGCTCAGAGAAGATCAGTCCTTTGTGGACGTCACTCTATCCTGTGAAAACGGATCTCTAAAAGCGCACAAGGTTGTGCTGTCTGCATGTTCCTCATACTTTCAGAAACTTCTTCTGGAAAATCCCTGCAAGCATCCAACTATAATTCTTCCCGCCGATATTATCTACACAGACCTCAAAACAATCATTGACTTCGTCTACCGCGGCGAAATCGATGTAACAGAATCAGAGCTTCAGGGTTTACTTCGCACTGCTGAtcagttaaaaattaaaggacTTTGTGAGACTGCAGAAACCGTTGATGAAGTTTCAGCAGATCCAgcgacaacaacaacaataacagtCCCAGAATCAATACCAATTACAAACATTGCAACAACACATCAATTGGCacatcaaataaattcaaatcaaagaaaatcacGTATCAGAAAACGTTCAAAATCACCAGATACTAATCAAGGAATACTAAGTGCAAATCAACAATACAATACAAcatcaattggaaatttaaCATCAACCGCTACAATAACATCTGGTACAGTGGTATCTAGTGGTTCTACTGTTACAACAACTCCCATAGCGCATTATAAAAGTGAACAGCATCAATCCCAAGTGTCTAGTTCAAATGTCGATCAAATAACTGATGACACTAATGTGaaaccaacaaaaatttgcaaaactgAAAACGGACTAAATAATGGAAGTGGAGTTGTTACTCCGGGTACAGCTATCGTAACACAAATTGTTGTAGCACGTGACGGTAAAGACAAGAATATGACTAGCCTGGGTATGGGAATGaaTGGCGGCCTTTTGGGTGTGCCAATGGGATTCCTAGATTTTGCTCCTGAACCACCAGCCCCATCAGCAACACCAGTTACAGAGCATGTTGACATGTCATGTCCACCAAGTGCTGACACAAGAGACTTATCAAATCCCACCGAAGCCCTTGATATAGACAATCAGATCGCCCAACACATAATACATCGTCTGGATCAATCACCGATGCATCATCTTCAACATCAAACAACAACTGATGATACAAATTCAAATCTTATCCAGAATATTAAAAGTGAAGTAGTTGATGTGAAACACCATGTTCAACAGCaattacaaaatcaacaatCTCAAACACATCAACAACATAGTCATCATCAGGATATATCTGGATCAACTGTAATGGAAATCGAtccaaataatattaaacatgAACCAGGAATGATAATAACACCGGAAATTGTCACAATGATGACCACAGGACACATGGatatttacAATTCGGATACTAGTGAAGATTCTTTGATGATCGCAAATGGATCACcaaatgaaaacaatgaaCCACATTACACGAATTTGGATCAACAGCAAGAATCAAAATGCCAACCAAATGGTGCCAAAACTTGGACACAAGAAGATATGAATTCTGCACTAGAAGCTCTTAAGAATCAAAATATGAGTTTAACAAAGGCTTCTGTAACATATGGCATACCTTCTACAACATTATGGCAGAGAGCACATCGGATGGGTATCGATACACCGAAAAAGGAGGGTAACACTAAATCATGGAATGAAGAAGCTCTTAATAATGCTTTAGAAGCATTACGAACTGGACAAATATCGGCAAATAAAGCCTCAAAGGCATATGGAATTCCGTCCTCAACTCTGTACAAAATAGCACGTAGGGAAGGTATACGATTGGCTGCACCATTCAATGCTGCTCCAACTACATGGACTCCGGAGGATCTTGAGAGGGCATTAGAAGCTATACGTGCTGGTCATACATCCGTCCAAAAAGCCAGCACTGAATTCGGAATACCAACAGgaaCTCTTTACGGTCGATGCAAAAGAGAAGGTATTGAGTTGTCTCGTTCAAATCCTACGCCGTGGTCGGAAGATGCCATGAATGAGGCTTTAGTTGCAGTAAGAGTGGGACATATGTCTATCAATCAAGCTGCGATACATTACAATCTACCGTACAGTTCACTCTATGGCCGATTTAAGCGAGGGAAATATGACACGAATGCAACAAGCACAGCCAGCAACAATAGTAGTGCAAACACAAGTGGAAATATTGAGATGATCGAACACAGTCCGGAAAATTCATTGCACATATTTCAGCAATTTCAATATAGTCCGGGACCATCAAATacccaacaacaacaacaacaacatcatcatcaacaACAGTCTCAACctcagcagcagcagcaacaacagcaacagcagcagcagcaacagcaacaacagccacaacaacagcagcagcagcaacaaccgCAGCAACAACAGCATCAAGTTCATCCCCAACAtcagcaacagcagcaacatCAACAGCACCACATTCAAcatcaacaacagcaacatttGCAGCAGCAACATCATCATGCCCAACATCAACATttacaacaacagcaacaaattCCCCAAGTTTATATCCAAACTGGACAAATTCAACAGAtttatcatcatcatcaaacATCGGTGAGAAATTAA
- Protein Sequence
- MAVRSHQYFSLRWNNYQSTMTSVFQQLREDQSFVDVTLSCENGSLKAHKVVLSACSSYFQKLLLENPCKHPTIILPADIIYTDLKTIIDFVYRGEIDVTESELQGLLRTADQLKIKGLCETAETVDEVSADPATTTTITVPESIPITNIATTHQLAHQINSNQRKSRIRKRSKSPDTNQGILSANQQYNTTSIGNLTSTATITSGTVVSSGSTVTTTPIAHYKSEQHQSQVSSSNVDQITDDTNVKPTKICKTENGLNNGSGVVTPGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTEHVDMSCPPSADTRDLSNPTEALDIDNQIAQHIIHRLDQSPMHHLQHQTTTDDTNSNLIQNIKSEVVDVKHHVQQQLQNQQSQTHQQHSHHQDISGSTVMEIDPNNIKHEPGMIITPEIVTMMTTGHMDIYNSDTSEDSLMIANGSPNENNEPHYTNLDQQQESKCQPNGAKTWTQEDMNSALEALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIDTPKKEGNTKSWNEEALNNALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVRVGHMSINQAAIHYNLPYSSLYGRFKRGKYDTNATSTASNNSSANTSGNIEMIEHSPENSLHIFQQFQYSPGPSNTQQQQQQHHHQQQSQPQQQQQQQQQQQQQQQQQPQQQQQQQQPQQQQHQVHPQHQQQQQHQQHHIQHQQQQHLQQQHHHAQHQHLQQQQQIPQVYIQTGQIQQIYHHHQTSVRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01431749;
- 90% Identity
- iTF_00877195;
- 80% Identity
- iTF_00877195;