Lsin005329.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- pnr
- Assembly
- GCA_905404315.1
- Location
- FR990156.1:1432871-1439065[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-16 5.2e-13 49.5 3.3 1 35 453 486 453 487 0.97 2 2 1e-17 3.7e-14 53.2 7.5 1 35 514 547 514 548 0.97
Sequence Information
- Coding Sequence
- ATGGAGGACGCGGTCATGCGGCAGGTGCGTGACGAGCACCGCGACGACCGCGAGGAGGCGCTGcagctcgtgaagagcgagggGAGGGCGGAGGGTGAAGCGGCGGGGGGAGGCAGCGAGCAGCACTCGGTGATCACGTCGCGGCGGACGCTACGGACCATCACGGCCTCGGGGCACATCACGGAGACGGCCGCGGGGGACGAGGGCGTGAAAGACGAGCCGCCCGAGCCACCGCTGCCGGAGCACGAGCAGCTGCACTACGCGCCCGTCGCCAAGGTGGAGGACGAGCCGCCGCAGCGACACCACTACGACGACGAGCGCCTGCGGGCCGCTGAGGCGGACGCGGCGCGCTACCTCGCCTTCAAGCAGGAGCCCTACCGCGTACTGCAGTCGCCGGCGCCTGCGCCCCCCGCACCCTCGCCTCAGCTAGACAAGCGCGTGCCGGTATCCCAGCAGTACACAGCAAGGGCCCCACCCCCTCGCACTGCGCCCTACCCGCGCGGCCTGGCGCTGCGCTACGGAGGGGGCGGGGCGGCCGATGACCCTGACGATGACACTTTCCTGCATAAGGAGAAGAGCGACCAACTGCAGCAGGCGTATGCAGCAGCTGGTGAGGCGGCTGCAGCAGCGGCAGCAGTGGCAGCAGCTACGGGGGCGACGCACGACGCCGCGCGTCACTACGTTTTGACGGATCAAGGCTCCTCGGCGCTCGAGATGATCCAGAGCACGGCACTGAGCAACCAGCAGGCCGTCGGTGTGGCCTACCAGCAGGTTAAATATGAGAGCCGCGGTGAGGGCGACGCTCGCGCCGGTACGTACGCCAGTTTACAACCAGTTACGTCGGTCCAGGGCTACACGTACGCGGGGCAGAGCCCCCAGTACGCCGCCGGGGGCTACGGCGCGTACGCGGGTGGCAGCAAGGAGCTGCTCACGCTGTACGGCGGGGGCGGCGGTGCAGGAGGAGGAGGTGGTGGAGGGCGTGGAGACGACTCTCCGCCGTCGCAGCTGCTGTACCGCTCGGACCCCACGCTGTCGTCGTCGTCGCTGGGCGCGCGGGGCCACGTGGTGTACGGGTCCGTGGTGCCACAGGCCCCGGCCGTGTACGAGGCGCCGCCCAGCCCCGGCAGCCAGCAGGTGACGCTGTACACCCACGGCAGCGCTGTCCAGTACAAGGTGGGCGGCGACCACTACCTGGGCCAGGGCGGCGGCGTGGAGTACGTGCCCGTGTCGGGCTACGAGGGCGGCCTGCTAGTGGAGAGCTATCCTGCACCCGCGCAGCCCTGGCCACCACACAACCTGCTGCCCATCGACGAGGGCTTCGACCCAGGAATGGCCGGCATGGGCGAGGTGAAGGAGTGCGTGAACTGCGCTGCCGCCACCACACCGCTGTGGCGCCGCGACGGAACCGGCCACTACCTGTGCAACGCGTGCGGCCTGTACACGCGCATCAACGGCGTGAACAGGCCCCCACTCAAAGGTCAGAAGACGAAGCCTCAGCAAGCACTGCCCACCAACGGCAACCGGCGGGTAGGAGTCACATGTGCTAATTGCCGCACCTCCAACACCACGCTGTGGAGACGGAACAACAACGGCGAGCCCGTGTGCAACGCCTGCGGCCTGTACTACAAATTGCACAACGTGAACCGGCCGCTTAGTATGAAGAAGGACGGCATCCAGACGAGGAAGAGGAAGCCGAAGAGTATGGGCGGGCATGGCAGCGTGTCGCGGGGGGGTGGCGGTGGAAGCTCGCTTTCAGCGGAGGCTCCCCCGCCCTCGCACAAGGAGCTGCCCCCGCTGTTCGCGGCCCTGGAGGGGGGCGCGCTGCTGCTCCTCCCGGCCCACCACCACCACCAACACACGGTATCCACGGTAGAAACGCCGCCCGATGCCGCTCCCGTCCACCGACCAGGGCCTTCCTAG
- Protein Sequence
- MEDAVMRQVRDEHRDDREEALQLVKSEGRAEGEAAGGGSEQHSVITSRRTLRTITASGHITETAAGDEGVKDEPPEPPLPEHEQLHYAPVAKVEDEPPQRHHYDDERLRAAEADAARYLAFKQEPYRVLQSPAPAPPAPSPQLDKRVPVSQQYTARAPPPRTAPYPRGLALRYGGGGAADDPDDDTFLHKEKSDQLQQAYAAAGEAAAAAAAVAAATGATHDAARHYVLTDQGSSALEMIQSTALSNQQAVGVAYQQVKYESRGEGDARAGTYASLQPVTSVQGYTYAGQSPQYAAGGYGAYAGGSKELLTLYGGGGGAGGGGGGGRGDDSPPSQLLYRSDPTLSSSSLGARGHVVYGSVVPQAPAVYEAPPSPGSQQVTLYTHGSAVQYKVGGDHYLGQGGGVEYVPVSGYEGGLLVESYPAPAQPWPPHNLLPIDEGFDPGMAGMGEVKECVNCAAATTPLWRRDGTGHYLCNACGLYTRINGVNRPPLKGQKTKPQQALPTNGNRRVGVTCANCRTSNTTLWRRNNNGEPVCNACGLYYKLHNVNRPLSMKKDGIQTRKRKPKSMGGHGSVSRGGGGGSSLSAEAPPPSHKELPPLFAALEGGALLLLPAHHHHQHTVSTVETPPDAAPVHRPGPS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -