Lsin004550.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- -
- Assembly
- GCA_905404315.1
- Location
- FR990155.1:20183673-20217305[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.6 1.3e+03 1.3 4.1 1 23 149 171 149 171 0.95 2 12 0.62 84 5.1 2.4 1 23 255 278 255 278 0.95 3 12 0.034 4.6 9.0 1.6 1 20 315 334 315 336 0.93 4 12 0.22 29 6.5 0.5 3 23 343 363 341 363 0.95 5 12 0.022 2.9 9.6 3.5 1 19 797 815 797 819 0.93 6 12 0.16 21 6.9 1.9 2 23 825 846 824 846 0.97 7 12 0.056 7.6 8.3 1.7 3 23 939 959 937 959 0.93 8 12 3.4e-06 0.00046 21.6 2.2 1 23 1002 1024 1002 1024 0.98 9 12 2.8e-05 0.0038 18.7 0.3 3 23 1031 1051 1029 1051 0.96 10 12 0.00099 0.13 13.9 1.9 2 23 1058 1080 1057 1080 0.95 11 12 0.29 39 6.1 0.9 3 20 1088 1105 1086 1105 0.90 12 12 0.0003 0.041 15.5 0.5 3 23 1118 1139 1117 1139 0.95
Sequence Information
- Coding Sequence
- ATGGCGAGTCGTAGTAAAAGGAGCAGAAAAACGAAATTGGTACCCCGTGAATTTGTTGAAATCGAGTCGGACGACGATGCAAAGATTGCTGAGTTAGAGgaACAGGTCGAGAAGACGTTGTCGAAAATTAGAAATAGCGACGAGCCGGCGCAACCTAATCTAAAATTTGATATCAAAGTTGAAGTTGAAGAATATCATGAAGAGTACCAGCCGAACAAGCCGACATTCTTCATCGTGGACATGAAGCAGGCCATCAAATATTCAAATAGATATAGAATTAAAAGTATCCCAAATCAAATACTCGACATAGAACTGAGAAACTACGCGGGGAGGGTAGTTCGAGATAATAATCAATACTCCcccaataaaaaatttcagcAAGTGATGTTCCAATGGCGGAACTGGTGCGATCTGGACATCGATAATCGAGGACCGCCTCTTCATTATAAATGCTATATATGCTCAAAGGGATGGTGGCATTTAAGACACTTCCAAGAACACATGAACAACCATGATGAGTATAATATGAAACTCGAAATTGTCAACCGGCTGCAATGCAATATAGTGGCTTACCTCGTCTACCGCAGACTGTTCATACGAAGTGTAAAATCAGTATGTTGGCGTTGTGGTCAGGATATCCTGCAGCATGAAGGGCCCCAAACATGCCCAGGATGTTCCGAAAATCTGGAGTGCTGCACTGCATTGATAGACCATCTACGAATCTGTGCCCATTATCAGGAGTTAAAGAAAGTGAAGCGACGATTCTGCTGCCACCTGTGTGCGGCCTTCTATCCAAGTGAGACGGAGCTGTTTGAGCATATGGTTAGAAGACATTCTGTAAGATCTGATCTACCAATTGTACTGTTCCCGGATTTCTGTAGACTATGCAAGGAGGTGAACTGCAGAATTGACCACAATAAGGAGCTGACACAGCCATGGAGTTTTAATTGTACTTTCTGCCACAGACGGTTCCAGAGTAGCGAAGAGCTGTATATGCATAAAGCAATGACCCGGTTCGTAGTGAATTGTGCGGTTTGTTCGAAGAAGATCAGGAGGAAATGCATGCTCGCTGAACATGTTGCAGTGCATACAAGTTCTTATGTGCTCAGCTTCAAGTGCTTATTGTGTGCGGATAATGTATTCCTTCATCCTTCCATGGTTCATGCACACAACACTCagatacataaaaatactacATATGCTGTTCCGTTTGATTATGTTTATTTGCCCTCAAGAACGGTGCTAAATGCAAAGAGTAACTCAATTTCTTCAAGCAATACAGCTCCAACTATATTGAACTCCTTCTCAGTAAATGAAAATATGAATGCACAAGACGTACGTAAAGGAAAGCGTTTAATAATTCCGGTACCTCATTCTAACAAAAAATGGAAAGGTATTGTTCACTGTCAAGATCCTGTAGCAGAAATTGTCGTCGACTCGGATTTAGAAGAAGAGTTGACAGATGATACGGAGAATAATAGTGCTAGAGTTAAAGAAGAGGTAGTAGATGATGTAGAGATGAACAATGATGAAGAGAATAAATGCAACGATGATAATTATTTGGCTGATATTAAAAGTGAAATTGATATCGAAGAGAACGAATTGACACATGTTAAAATTGAAGCCAAATCGACAAATGACAAACCGTATATAGATTATGTTAAAACTGAATATGATATTATTGCAAGCTCTTCTAATTCTGCTCGTATTATCGACGTCAGTGTAAATGTGGAAATGGAACAGGATCAAATTAACGAAATTAATAGAACAATAGATGGTACAGCCCAGGATCCAAACGAAGAAAATTCTATAAAGGCACCTGATGACGGAATGGATGATGTAAAGAATTCAATTAGTACTGTTGGCAATTGTAGCGAAATTGAAAACTCTAATGGTGACAATATTGAAACTCCAACTGGAATTCCACTCATTGATTCAGTAGATATAAAAGTGGAGAAAGACTTTATGGAGGATGAAAAAGGAACAGACGAAGCGGCGAATGATAATCTTTGTGAATATTCAGAAGTGGCGCAAGAGAATGCTGATGTTATAAAGAAAGAACCAGATGAGGTAAATAAAGACCTAGATTTTGTTATTGAAGAATACACTGCAGAAGAGATAAGTAAAGAAATGGAAAATAATGAAGGTGTACCTGATGATAATAGAGATAAAAAGCATTGGGGACTTCTGTCGGATGTAATTAActtttttaatAAAAAAGCAGCACAGAATTCTGATGACAATGATGAAACGTACGAGACGGATATAGTGATCATCCAGCAGCGAGACGACTCCGAAGAGATGAAAGGTGATGAGACGGATGAGTCCGAAGAAGTGGCTGAGGAtgagaaaaaaatAACTATAAACCTGAACAAATATACTCGTGAGTTCGCGTGTACAAAGTGCAAGAGATCTTTCTCGAGTCTCCACTCATATATGCAGCACTTTCCATCTCACGACTACCCGCCGAAAACCTGTCCGCAATGCTGCCAAGAATTCGAAACGCCCACGAAGCTGACTCTCCATGTCTCCACCCACTTCAAGAGTTTCTTCATCACCTTCCGATCAATCAGTAACAAGagGAAGGACTCTGTGACCTGTCACCGGTGTCAAGTCTGCGACTGTAAGGTGCTCAAGAAGAATTTTTTCAAGCATTGGGAATCACATCTTGAGCTGAAAGGGTTCGCTGGGGGATCCGAGGAGATGAAGCAAACCAGTGCAGAGATCCACGAGGATCCTGCCATCAGAAAGATCATAGATCTGTACCAACTTGGTGATGTGATAACGCGAATAGCTGTTAATGGAGTGATTGCCTGCGTCGCGTGCAGTAGGAGGTTCAAACGCCGCAGTGACTGCGCCCGTCACATGAACGAGCATCTGCTGAGTGACGCGTATCGCAACAAGACTAAGTACAAATCCCTGAGATGCCAACTTTGCGGACACAACTCGAGTTGCTCCGCTAAATTTAGATGTCATTTGCGCATCCACGCTTCGCTCCCGGTGTACAAATGCGAGGCTTGCGACAAGAACTTCAGTGACTCGAGCAACTTCACGAAACACAAGAAGGTGCACAACATCAAGACGGTCATATGTGATATCTGCAAGAAAAAGTTTACGGCCAAGGCGTCTCTGGAGCGACATATAAAGGAGCATGAAGTAACGAAATCAATCAAATGCTACGcgtgcaataaaatattttattcgaagTCCGATTTCAAGAAGCACGCGCGAAACAGACACGAGAGGAAATACAGTTACGGCTGTCATATATGTGGCCTGAGATTCGATTCACTGAAGCATAAGTGGGATCATCTGTGGAATgaacATAAGGAACGCGCCATCAACAATGATTGTCCGTTGTGTACGAAAGCTTACAGAAGGTACACAGATCTGAAGAAGCACGTGCAACAGGAACACGCAAACACATTGACAGACAACGGCGCCTCCGTCCTGAGGAAAATCAAGGAGTTTCGGGAGTAA
- Protein Sequence
- MASRSKRSRKTKLVPREFVEIESDDDAKIAELEEQVEKTLSKIRNSDEPAQPNLKFDIKVEVEEYHEEYQPNKPTFFIVDMKQAIKYSNRYRIKSIPNQILDIELRNYAGRVVRDNNQYSPNKKFQQVMFQWRNWCDLDIDNRGPPLHYKCYICSKGWWHLRHFQEHMNNHDEYNMKLEIVNRLQCNIVAYLVYRRLFIRSVKSVCWRCGQDILQHEGPQTCPGCSENLECCTALIDHLRICAHYQELKKVKRRFCCHLCAAFYPSETELFEHMVRRHSVRSDLPIVLFPDFCRLCKEVNCRIDHNKELTQPWSFNCTFCHRRFQSSEELYMHKAMTRFVVNCAVCSKKIRRKCMLAEHVAVHTSSYVLSFKCLLCADNVFLHPSMVHAHNTQIHKNTTYAVPFDYVYLPSRTVLNAKSNSISSSNTAPTILNSFSVNENMNAQDVRKGKRLIIPVPHSNKKWKGIVHCQDPVAEIVVDSDLEEELTDDTENNSARVKEEVVDDVEMNNDEENKCNDDNYLADIKSEIDIEENELTHVKIEAKSTNDKPYIDYVKTEYDIIASSSNSARIIDVSVNVEMEQDQINEINRTIDGTAQDPNEENSIKAPDDGMDDVKNSISTVGNCSEIENSNGDNIETPTGIPLIDSVDIKVEKDFMEDEKGTDEAANDNLCEYSEVAQENADVIKKEPDEVNKDLDFVIEEYTAEEISKEMENNEGVPDDNRDKKHWGLLSDVINFFNKKAAQNSDDNDETYETDIVIIQQRDDSEEMKGDETDESEEVAEDEKKITINLNKYTREFACTKCKRSFSSLHSYMQHFPSHDYPPKTCPQCCQEFETPTKLTLHVSTHFKSFFITFRSISNKRKDSVTCHRCQVCDCKVLKKNFFKHWESHLELKGFAGGSEEMKQTSAEIHEDPAIRKIIDLYQLGDVITRIAVNGVIACVACSRRFKRRSDCARHMNEHLLSDAYRNKTKYKSLRCQLCGHNSSCSAKFRCHLRIHASLPVYKCEACDKNFSDSSNFTKHKKVHNIKTVICDICKKKFTAKASLERHIKEHEVTKSIKCYACNKIFYSKSDFKKHARNRHERKYSYGCHICGLRFDSLKHKWDHLWNEHKERAINNDCPLCTKAYRRYTDLKKHVQQEHANTLTDNGASVLRKIKEFRE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00875807;
- 90% Identity
- iTF_00875807;
- 80% Identity
- -