Basic Information

Insect: Leptidea sinapis
Gene Symbol: -
Assembly: GCA_905404315.1
Location: FR990180.1:11540420-11548285[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.013 1.7 10.4 4.2 1 23 80 103 80 103 0.96

2 18 1.5 2e+02 3.9 3.3 1 23 172 194 172 194 0.96

3 18 0.0035 0.48 12.1 0.7 2 23 200 221 199 221 0.97

4 18 0.36 49 5.8 2.7 2 21 470 489 469 490 0.94

5 18 0.11 15 7.4 0.4 2 23 737 758 736 758 0.96

6 18 0.0064 0.87 11.3 0.5 2 23 836 857 835 857 0.96

7 18 0.082 11 7.8 0.4 1 23 865 887 865 887 0.95

8 18 0.082 11 7.8 3.6 1 23 925 947 925 947 0.95

9 18 1.9e-05 0.0026 19.3 2.0 1 23 955 977 955 977 0.99

10 18 0.1 14 7.5 4.2 1 23 1055 1077 1055 1077 0.98

11 18 0.43 58 5.6 1.4 1 19 1133 1151 1133 1155 0.93

12 18 2 2.6e+02 3.5 2.9 1 23 1161 1183 1161 1183 0.96

13 18 0.01 1.4 10.6 0.6 1 23 1251 1273 1251 1273 0.91

14 18 0.0088 1.2 10.9 1.6 1 23 1279 1301 1279 1301 0.96

15 18 0.006 0.8 11.4 2.6 1 23 1391 1413 1391 1413 0.97

16 18 4.4e-05 0.0059 18.1 1.2 1 23 1419 1441 1419 1441 0.99

17 18 0.86 1.2e+02 4.6 0.7 3 23 1533 1553 1532 1553 0.94

18 18 0.012 1.6 10.5 1.9 2 23 1565 1586 1564 1586 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.013	1.7	10.4	4.2	1	23	80	103	80	103	0.96
2	18	1.5	2e+02	3.9	3.3	1	23	172	194	172	194	0.96
3	18	0.0035	0.48	12.1	0.7	2	23	200	221	199	221	0.97
4	18	0.36	49	5.8	2.7	2	21	470	489	469	490	0.94
5	18	0.11	15	7.4	0.4	2	23	737	758	736	758	0.96
6	18	0.0064	0.87	11.3	0.5	2	23	836	857	835	857	0.96
7	18	0.082	11	7.8	0.4	1	23	865	887	865	887	0.95
8	18	0.082	11	7.8	3.6	1	23	925	947	925	947	0.95
9	18	1.9e-05	0.0026	19.3	2.0	1	23	955	977	955	977	0.99
10	18	0.1	14	7.5	4.2	1	23	1055	1077	1055	1077	0.98
11	18	0.43	58	5.6	1.4	1	19	1133	1151	1133	1155	0.93
12	18	2	2.6e+02	3.5	2.9	1	23	1161	1183	1161	1183	0.96
13	18	0.01	1.4	10.6	0.6	1	23	1251	1273	1251	1273	0.91
14	18	0.0088	1.2	10.9	1.6	1	23	1279	1301	1279	1301	0.96
15	18	0.006	0.8	11.4	2.6	1	23	1391	1413	1391	1413	0.97
16	18	4.4e-05	0.0059	18.1	1.2	1	23	1419	1441	1419	1441	0.99
17	18	0.86	1.2e+02	4.6	0.7	3	23	1533	1553	1532	1553	0.94
18	18	0.012	1.6	10.5	1.9	2	23	1565	1586	1564	1586	0.98

Sequence Information

Coding Sequence: ATGTCCTCGTCACCGCGCGCACACGTTGGCGAGCTTGCGACCCTCGTGCGCTCTGTCGAAGCGCGATTCCTAGGCGATGCATCCTCTGAGGCCTCTGCTGAAAACGCCGAGGACTTTGAACTCGAAGATTGTAAGATAAGACGGAACTATTGTTGCACCAAGTGCAAGTTCTATACGCAGAACCCGAGGGCTTATCTCTATCACACTCGCGACGTTCACTTTGAGAAGTTTAAAATTCATGAATGTCCTCATTGCGTCTACGCTTCTAGGCATCAGCAAAAACTCTCGAGGCACATAAGACTCATTCACGATACGTCTGCGGATCTAAAGATTGAAGCCAACGTACCGGACAGGGTGAAATTTGATAATGCGGACGAAATGTTGGACGAAGTCGATTACATTGATGAAAATATGCCAATCGATGTACTGAGTTACCACGACGTCAAGGTCGAAGGTGTTGAGTTGAACAATGATGACAACTCAAACGGTGAAGTGAATCCGAAGGGAAAATTTTACACCTGCAATAAGTGTAATTACGTGACACATTTAAAAGCGAGATATGCAAAACATTTGAGCAATCATTCCTTGCCAATGATTAAGTGTACCGTGTGTGACTTCCGTACGCCATATAAGTGGAGTTTGGATCGCCACATGAAAAATCACGGTGGGAAGGGGAATTTTCGTTGCGCTGTATGTAATTTTACGACGGACATCCGACAGAGTATGACAGTTCACGAGGTGAATCATCACACGCCGTCCGTAGGAAATCGGGGGTCGATTCGATGTCGTTATAAAGTGGGCGGCACTAATTTGAACGATTTGGACAGCGCGGATGAGAACTCTCTGATTTTGAAGGAGGAAGAGAGTGACTCGCAATCGTCGCAGTGTGCTTCATTGGACATGGGAGTGGAATATAATGATAAAGACATGATTAACTGTAACAGCGATTCAAATGAAGCAACTACACCGGAGATGCAGTTACAATATAGTAACCAATCAGATGATTCAAAAAAGCATAGTAAAAAGGCACCGAGGCCAATACCTCAACTTATACCCTTGAGTTGTTCAACACCTAGCCAAAATAAACCTATGACAGGAGAGCCACcagcaaaaaaatttaaagaagataATTCATTTGATACAGATACAATTAAACAGAAATATTCATCATTGGACATATCTATAACATCGTATATACCAAAGGAGTCAACAAACCGTAAGAAAAATGAATCATTTTTTGACAGGCTTAAAGAAAGAATATTAACAGAAACTGGAGAAGAAGGatctttaaaatgtaaaaaatgtggATTTGAAAGCAAATGTTTATCAGAATATTCAGTTCATGAGAAAAACTGCATGTCACAATGTAGCCGATCTAATACATTGCCATCCACATTAGGATCAACGCGTTGTCAGAACTGTAGACACCGATGTAAATCCAGCGCTGATCTCGTAGTACATTTAAAATCGTGTATAAAATCGGATCCAGAAGCACAAGTGGTGGAATCGCAAAAATGTAATGGAGATAAAACTACGATAACACTAATAGATAAAGATGTGGGTCCACATCCGATGGAAAACGTTGTATTTGTTTGGAATAATATTAACAGAGAAGAAAACAAATTTGATACTCCTCTTGATATAAATATCACTGATGATTCCACACTTCCTGAAAGTAAGCTTTTTGATTCTGAAATTGTTGATGATGGAGATGGTATGAATTTGTCACCAAGTCAAGCCGTTGGTAAAAAAGTTTTCAAGTGTCCGCATTGTTTATTTTGGGCATCAACTGCATCAAGATTCCATGTTCACATAGTGGCTCATTTGAATAGAAAACCTTTTGAATGCTCTTTGTGCAAATATAAATCCAATTGGCGTTGGGATATCACCAagcatattaaattaaagtcaGCTAGAGATCCTGAACACGCCGAAGCTAAAGTTCTTATGACAGACGAAACGGGAAGgcgtaattatattaaatataataagtactTAGCTGTGTCAATTTTAAACGATAAAGGAGAAAATGAATTTCATTACATCGACCCAAACGCACCAATGGATGCAAATTTGGATGAGGATACATTGCCTGATGCTGGAAATGATACAATGAACTATGATATCCCACTGAACTTACAAACACagcaaaattataacaaaatagatTTGGACATGAATACAAAAAAAGTGAAAAAGACGATATGGAAATGTAAAAAGTGCAATTACAAAGATTCATCCAAGGAAGCTCTCATAGAACATGTTCGAGAACATACTAAAGGGGATGACGGTTCAAGTGAGTTAAAATCAGAACTTAATAAGAAATTGGAAAATACTGTTGACCCTGCGGACTTAGCTTATCGGTGTGGGCATTGCAACCAATTATCTAACTGGAAACATGTTATACAAAGACACTGCCGTTTGAAACACGATGGCATTATAAATGTGATCACTACAGTAAAACCCAAATATGAACCAGGATCTACCAATGACATCGTTGGAGACATGTGTCCTAAATGTCCATTTAAATCCAATGAAAAAAGTTCACTTGTCTCGCATATGCAGAATCACCAACCATCGCGCCAttctatatttaaatgttatttttgtccTTATTTCGTAAAAGATGAGCAAGAATTAATACAACATCTTGTTTTACATGGGGTTAATGATCCCGAAGAATATATTTCTAAAGCAATGGGAAGTAAATCACCGCTTCCCGATCAAATTAACTCTCAATTCAGATTTAGCATATCGGCAACATTTAAGCGACATAAGTGTACGGAGTGTCCTTACGAAACAAATAGTAAATCTCAATTTATGTATCATGAACAATTTCATCGTCTGCCAGCAGATACGCCATACAAATGTCCAGAATGCAATTACAGTGTTTCGAAAAGGCATCTACTCCAACAACATTTACGAGTCCATGGTATATTTCCCAACAAGGAAGATGGAGATTTTGATCCAATTACGAACTCCAATGAATCAGAGATGACTAGCGAGGTGGACGAAATACCCTTTGTTTGGGTTTCCGCAAAAGAtgaatttcataaaatgtacAAGTGTCGCTATTGCTCGTATGTTAATGCTAAAGAGTGTAAAATTCCAAATCACGAACAAATACATTGCATTGTTTTTGAAAACAgtgatattacaatatttaaatgtttagaGTGCAAATTTACGTGTGATAGTAAATCCAGATTAGCTGATCATTCCAAAACGCACGGGGAAATATACGGACGAATATATTGTCCGGTTGAATTTGATGTACCAGATGAAGAACAAATAGCCAAGTTGAGAAAAGTTCTCGAGAAAGACAAATTATGTTCGTCTGACGAAAGTTTAAAGGAGGACGCAGTGATAGGAGATaccaaagaaataaaaacaatgtatTTTTGTCAAAAGTGTCCAGCAAGATTCTTTTCCGAAAATGAATTAAGAATTCACGATAAATTTCATGACTTGATTTTCTTGCATAAATGTAAAAGTTGTGAATTTTCTGTGCCCCAAGAGAATGAACTGAATATGCATAATTGTGTTCACACAGATGAATACAACACCAAAACAAAAATGCTGAAATTTATGCATAAAATTAATTCAGTACATAAAGAGCCACGTACTCAATTAGTACACTGTCCAGTATCCTCTGAGGGTACTTGGGTGGTTGCTAATCCAggtaaaaattttcaaatcgtcgaaaataatcataaaaggCAAGGTGATCAAAAACATGGTCCCAAGCAGTATTACTGCAAAGAATGTCCTGCAAAATTCTTTAAAAGTTCTGCTTTAAATTACCATGCTGGGTTACATGGGGCAGAAGGTGACCATAAGTGCAAAAAGTGTAGTTATACTGTAAGGAATATCGGAAATCTTGCTAAACATGAACTTTTGCATGAAAAAGAAAGGAAGCCCTCAGGTTGTGAATATGATTCTGGGGATGATTTAGATTTTAAAAACATACCTTTATCAGGAACAGActtatttcaaagaaaaacCGAAGCTCAAAAACGAGTTCTTACTGATAAGGATAAACTTGTAAAGCCGAATGATCACTTCCCACCTGTCTTACAAGCTGACCCACAATTTGGATACCTAATGCATGGAAACCCAGAGTTTATTTAtccaacatatttaaaaaatggccGCCAAAAGGAAAAAAGATACAAATGCCATAAATGCCCATCTGCATTCGAGAAAAGAGAACAATACAAAATACATCTTTCACTTCATGGTTCTAAACAACGATACAAATGTGAAATTTGTGACTATTCAGTTAAATATTATGCTAACTATGTACAGCATATGCGAAAACATCAAATGAATGATGAAGCTCTGGCTGAAAGAAAAAAGGGTAGTAATGGATTAAATGAAACTGAACATCAAGAAAATAAACAAGGTATTAAAAGTGAAGCTGTTACACTTGCAATTAAAACCATGCCAAAGAGAGTGAAAAGTGATTTCCAGCAGTTTTCGATAAGTGATCAACAAACTCTTCGTTTATTACAACGAAGACGATCATTTACGAATAATGCTAATGAAACAAATGCAACTGACCCATCGCCAACAAAAGATAGAAAGTTGCTTTTGTGCATGTTATGTCCTTATACTAATCAACGTCAAGATGCGCTACAAAATCATTACAAGCGGCATGACGAATCGGATTCCTTTATAAGTGGAAATAATAAATGCTCATTTTGTGATTTAGTTGTAGTCCAATCTCATTTTCTAAGGGAACATCTTAAGACCcattttaattatatgaaaaatatttcaccAGAATGTTATGCTGCTAATGAAGGTGTAGGTTTCTCGTTTACTAAAGTGGATGAAGAAGATTGTAAGCCCACAGagcttaaacttaaaacaaaaaataacggACTTTTGTGCAATGAGGATAAACTGTATGTGAAAATTGAAACAGGCGAATTTCACGTACAATCTTAG
Protein Sequence: MSSSPRAHVGELATLVRSVEARFLGDASSEASAENAEDFELEDCKIRRNYCCTKCKFYTQNPRAYLYHTRDVHFEKFKIHECPHCVYASRHQQKLSRHIRLIHDTSADLKIEANVPDRVKFDNADEMLDEVDYIDENMPIDVLSYHDVKVEGVELNNDDNSNGEVNPKGKFYTCNKCNYVTHLKARYAKHLSNHSLPMIKCTVCDFRTPYKWSLDRHMKNHGGKGNFRCAVCNFTTDIRQSMTVHEVNHHTPSVGNRGSIRCRYKVGGTNLNDLDSADENSLILKEEESDSQSSQCASLDMGVEYNDKDMINCNSDSNEATTPEMQLQYSNQSDDSKKHSKKAPRPIPQLIPLSCSTPSQNKPMTGEPPAKKFKEDNSFDTDTIKQKYSSLDISITSYIPKESTNRKKNESFFDRLKERILTETGEEGSLKCKKCGFESKCLSEYSVHEKNCMSQCSRSNTLPSTLGSTRCQNCRHRCKSSADLVVHLKSCIKSDPEAQVVESQKCNGDKTTITLIDKDVGPHPMENVVFVWNNINREENKFDTPLDINITDDSTLPESKLFDSEIVDDGDGMNLSPSQAVGKKVFKCPHCLFWASTASRFHVHIVAHLNRKPFECSLCKYKSNWRWDITKHIKLKSARDPEHAEAKVLMTDETGRRNYIKYNKYLAVSILNDKGENEFHYIDPNAPMDANLDEDTLPDAGNDTMNYDIPLNLQTQQNYNKIDLDMNTKKVKKTIWKCKKCNYKDSSKEALIEHVREHTKGDDGSSELKSELNKKLENTVDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGIINVITTVKPKYEPGSTNDIVGDMCPKCPFKSNEKSSLVSHMQNHQPSRHSIFKCYFCPYFVKDEQELIQHLVLHGVNDPEEYISKAMGSKSPLPDQINSQFRFSISATFKRHKCTECPYETNSKSQFMYHEQFHRLPADTPYKCPECNYSVSKRHLLQQHLRVHGIFPNKEDGDFDPITNSNESEMTSEVDEIPFVWVSAKDEFHKMYKCRYCSYVNAKECKIPNHEQIHCIVFENSDITIFKCLECKFTCDSKSRLADHSKTHGEIYGRIYCPVEFDVPDEEQIAKLRKVLEKDKLCSSDESLKEDAVIGDTKEIKTMYFCQKCPARFFSENELRIHDKFHDLIFLHKCKSCEFSVPQENELNMHNCVHTDEYNTKTKMLKFMHKINSVHKEPRTQLVHCPVSSEGTWVVANPGKNFQIVENNHKRQGDQKHGPKQYYCKECPAKFFKSSALNYHAGLHGAEGDHKCKKCSYTVRNIGNLAKHELLHEKERKPSGCEYDSGDDLDFKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCEICDYSVKYYANYVQHMRKHQMNDEALAERKKGSNGLNETEHQENKQGIKSEAVTLAIKTMPKRVKSDFQQFSISDQQTLRLLQRRRSFTNNANETNATDPSPTKDRKLLLCMLCPYTNQRQDALQNHYKRHDESDSFISGNNKCSFCDLVVVQSHFLREHLKTHFNYMKNISPECYAANEGVGFSFTKVDEEDCKPTELKLKTKNNGLLCNEDKLYVKIETGEFHVQS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00875785; iTF_00874929;
90% Identity: iTF_00875785;
80% Identity: -