Lsin014376.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- -
- Assembly
- GCA_905404315.1
- Location
- FR990166.1:12048989-12073109[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00017 0.024 16.2 1.9 1 23 241 264 241 264 0.97 2 9 2.6e-05 0.0034 18.9 2.5 2 23 271 292 270 292 0.97 3 9 1.8e-05 0.0025 19.3 5.7 2 23 324 345 324 345 0.98 4 9 0.0032 0.43 12.2 0.5 1 23 349 372 349 372 0.96 5 9 0.0084 1.1 10.9 2.2 3 20 388 405 386 407 0.94 6 9 0.23 30 6.4 8.0 2 23 443 465 442 465 0.92 7 9 0.76 1e+02 4.8 0.0 1 23 477 498 477 498 0.91 8 9 2.6e-05 0.0035 18.9 3.0 1 23 504 526 504 526 0.99 9 9 7.3e-05 0.0099 17.4 5.7 1 23 532 555 532 555 0.98
Sequence Information
- Coding Sequence
- atgacTTCTGAGCTGAAAATATGCAGAATATGTCTAGCAACAGATGTAAAATTTTTTCACTTTGACCAATATAATCTTAAGTCTTTTTATGAAGAAACATtagttttaaaaGTACTCGAAGGAGATGAACTTCCACATTATTTTTGCTTTGAATGTGCCACTATGTTAgataaatttcataaatttaaagtgaAGTGTCGCCAAGGTTGGGACGTTCTTGGCAACTTACTTTGGCTAAGATCAATAAAATATGAGACTGTGAAGTCTATGAACAGGAGATCATATAATCTAAGCTCTACTTTGGAGGTAACATGCACAGAAAACATTGATATTCTGTTCTCAGAACTGTCAGAAACCACAGATATTGATAAACTAGAAGATGAAGTAATAGCAAAAGTTGAACATAGTACAGATACAGAAGTTGAATGTGACTTTGAAATGGATATAGAAAATGAAGTCAAACCATATAGAATAATTCCAGTTGCAGAAGTTGATATAAAAGTTGAGAAAGCTAAGCCAAGGAGAGCAAGGGTTAAAAAAAagcagtttaaaaaaattaagagaaaAGAACATAGTCCAGTTGGAGAGGATGATAAGATTTACACAAAAAGGCCACAAATTCGTAATTCAAAGGGTTGGAAATTGCATATTATGGATGAGGAAACTGCAAGACAGAGTTTTAATGCCCGGAAAGAGGATAGCAAATACATTAAAATGCCATTTAAATGTACAGATTGCTATAAAGGATTCTCAAAGGAAGATATACTCAAGCGACATATGCTTCGGAGGCATGAAGTGAAAAACGGACTTCAATGCAACCTATGCAAGATGCGTTTTAAGTTTTCGTGGCAGCTCCGTAAACACATGCGGGATCACTACACGATATATGAATGTTTGCGGTGTGGATTGAAATGTCCTTTGGAAGCCTCAGCGATACTACACGAAGAAGTGCATACTGGTATTGTGAGAAAATGTCCCCATTGTAATGAAGAGTTTagGCACCAGTCTACGTACTACTCGCATATGCGAACACACAGAAGTAACCACATATGCACAATATGCGGCTCTTCGTTCGTCAGCGAGCTGGGACTGTTACAGCACAAAAGAGTCAAACACTTATTAGACGacGAGAACCAAGCTGATGAAGATGTGAGCACGTTCTGCGAGAAGTGCAACAAGACCTTCGAGACTCGGAAGGCGTTCGAGTATCACCTGTTTCACTCCGCCATGCATATCGTGACGCCAGAAAATAGATACGAGGATATAAAATACACGACGGATACAAGGATCTTACGAAGATTGCGAAGAGATTTCAAGAAACCGACGACATGCCACCAGTGCGGCAAACACTTCGAGACGCAGGCAGCGTGTATGAAGCATCACATCAAGGAACACCCCAGGACGTCGTTCTACGCGCAGAGCGACCGACACATCTGCGAGATATGTGGCGCATCGCTTGCGCCTGGCAGTGTCGCCACCCATCAGAACACTCACACCAAAGAGAAGATCTACAAGTGTGATACATGCAGCAGGGAGTTCTTCACCAGCATGAGTCTTAAGCGACATCAGTTGaCGCATACGGGTGAGAAGCCACATAAATGTTCGTTATGTGACAAACGTTTCACACAGAGCAACAGTATGAAGCTCCACTACAGGACATTCCATCTTAAGGAACCCTACCCTAAGAGAATAAGAAGAAAAAAGAATGAAGATCCGTCTGACAACTGTGAGACATCGAGTGACTGTGACTCCGGCCAGAACAACCCCGAACAGTCCCGCCGGGGACTCGAACCGGCTGTCCACGAGAACGGGGCCTACTTGCCCCTCTATCCGAACTAA
- Protein Sequence
- MTSELKICRICLATDVKFFHFDQYNLKSFYEETLVLKVLEGDELPHYFCFECATMLDKFHKFKVKCRQGWDVLGNLLWLRSIKYETVKSMNRRSYNLSSTLEVTCTENIDILFSELSETTDIDKLEDEVIAKVEHSTDTEVECDFEMDIENEVKPYRIIPVAEVDIKVEKAKPRRARVKKKQFKKIKRKEHSPVGEDDKIYTKRPQIRNSKGWKLHIMDEETARQSFNARKEDSKYIKMPFKCTDCYKGFSKEDILKRHMLRRHEVKNGLQCNLCKMRFKFSWQLRKHMRDHYTIYECLRCGLKCPLEASAILHEEVHTGIVRKCPHCNEEFRHQSTYYSHMRTHRSNHICTICGSSFVSELGLLQHKRVKHLLDDENQADEDVSTFCEKCNKTFETRKAFEYHLFHSAMHIVTPENRYEDIKYTTDTRILRRLRRDFKKPTTCHQCGKHFETQAACMKHHIKEHPRTSFYAQSDRHICEICGASLAPGSVATHQNTHTKEKIYKCDTCSREFFTSMSLKRHQLTHTGEKPHKCSLCDKRFTQSNSMKLHYRTFHLKEPYPKRIRRKKNEDPSDNCETSSDCDSGQNNPEQSRRGLEPAVHENGAYLPLYPN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00875670;
- 90% Identity
- iTF_00875670;
- 80% Identity
- -