Basic Information

Insect: Leptidea sinapis
Gene Symbol: ZIPIC
Assembly: GCA_905404315.1
Location: FR990155.1:25311584-25332021[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.15 20 7.0 2.3 1 23 336 358 336 358 0.98

2 11 0.12 17 7.3 2.7 1 23 365 388 365 388 0.92

3 11 0.21 28 6.5 0.4 1 23 392 414 392 414 0.96

4 11 0.0017 0.22 13.2 2.9 1 23 419 442 419 442 0.98

5 11 0.0043 0.58 11.9 0.6 1 23 446 469 446 469 0.95

6 11 1.7 2.3e+02 3.7 0.4 3 21 483 501 482 506 0.90

7 11 0.044 6 8.7 0.2 2 23 530 552 529 552 0.96

8 11 0.0002 0.027 16.0 2.3 1 23 567 589 567 589 0.97

9 11 4.5e-07 6e-05 24.4 0.9 1 23 595 617 595 617 0.97

10 11 2.6e-06 0.00035 22.0 0.6 1 23 626 648 626 648 0.97

11 11 0.054 7.2 8.4 6.2 1 23 654 677 654 677 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.15	20	7.0	2.3	1	23	336	358	336	358	0.98
2	11	0.12	17	7.3	2.7	1	23	365	388	365	388	0.92
3	11	0.21	28	6.5	0.4	1	23	392	414	392	414	0.96
4	11	0.0017	0.22	13.2	2.9	1	23	419	442	419	442	0.98
5	11	0.0043	0.58	11.9	0.6	1	23	446	469	446	469	0.95
6	11	1.7	2.3e+02	3.7	0.4	3	21	483	501	482	506	0.90
7	11	0.044	6	8.7	0.2	2	23	530	552	529	552	0.96
8	11	0.0002	0.027	16.0	2.3	1	23	567	589	567	589	0.97
9	11	4.5e-07	6e-05	24.4	0.9	1	23	595	617	595	617	0.97
10	11	2.6e-06	0.00035	22.0	0.6	1	23	626	648	626	648	0.97
11	11	0.054	7.2	8.4	6.2	1	23	654	677	654	677	0.92

Sequence Information

Coding Sequence: ATGCGGTGCTGTGTTCCTTGGTGTAAAAATGATACACGACATATCGATAAATCTCTTAGCTTGTCCTTCCATTCGTTTCCACAGGAGCCTCTGAAATCAAAGTGGTTGGAAATACTTGGCATGAAAACCTGTTTTACCCGAAGTTGTGTATGCTCGGAACATTTCTCTGAGAGTGACATACATTTAACTAAAAGAGGTTTGAGGAAGTTAGCTGTAGATGCTGTCCCGATTGGAAAGGCCTGCAGAGTATGTCTAGTATCAGATGTTAAGTTGTATCCACTATGGAAGTATAATCTAAATCGAGCCTACGAGCAGCTAACAGGAGTTatgGTTTCCACTAAAAGTACCCTTCCGAGATATGCTTGCGTGGAATGTGCTCAAAGATTATTAAATAGTCGAAGTTTAATAAGTAAATCTTCTATATCAAATGCGCTGTTGCAGAATCTGCTTAAAGATGAGCGTTTATCTCTTGAAACCATCAAACAAATAGACAGAAATGCAAATTCACTATCATCTAGTTTATGTACGAAATTAATTGATAAATACGACGCAATATATAAAACGAATGAATATACTGACTCTAAATTGGAATATCCTAATAACGATGTTGGTAATGttgatactttaaaaaatgaatatatacctaatataaatGATAATCTTGATCTTTATAAATGTGAAGATGACGCTGATAGAAACATTGAAACTGCTAACGAAACAGACACAGTGAATACTGATAATGAGTCTGATGATGAAATTGATGGTAGTAATGAAGATGCATTTCATACCAatgataaaaatgaaattgatgAACATAAAGATAAATGCGAAAATATTTCTAATGTCAGTGAAGACGAAGATAGTGATGAATTAAATGAAAGTAAAACGAATAAAAGTGAAATGACAACCAGCGGTCCGCTTATAAAAGTGACGAAGTTGTCACTTGAAGAGCAAATAGCTGATATTGAGAAGAGGAAAGACTCGAAGAATTTCAAGTGTTCCTTGTACAAATGTATGGAATGCTTTAAAGGATTTTTGGACGAACGAACTTATAGCACACATATGACAAAGCATTCGAATgcTTCCGGAGACCATGTGTGCAAAGTTTGCAAGAACTATTACAAGACTAAGACAAGACTAACTCAACATGTGCTGGCGAGTCATCGAAAGAAATACAGTTGTAGTGTGTGCCCGTTTGTCACGGCTCATCGTAACTCGGCCCTAGCTCACAAAAACTGGCACCAGGGAACTAAATACACGTGTGCCTATTGCTCTACGGAATTCTATAAGAAAACGTCGTATTTTTCTCACATTCGCATAAAGCACCCGTCGGACTTCGTTTGTGAGTTGTGCGGACACTCCTTTGTGAGCGAGAAAGGAATTGAATCTCATAAGAATATCAAACACCTACTGGACAGTAATGAGCTACCATCGGACGCACCTCTGTGTGAGCTCTGTAACGTTCGGTTCGCGTCTGAAGAGGCTCTTATGTGTCATTTGAAAGTGTCCGCTAGACACGCGACAGAACCTCATAGAACTGGAACAGAACGGAGGAAAAAAGGTGTTCCAACCCAGCGCTGGGACAGTAGCTGTGAGCTGTGTGGGATAGAACTTAACTCGGCTCGGGAGTACCGCTCGCATTTCAGACGCATTCACCGCGATCAGAATCGAACCAAGTACCCGCCGGTACGAAGGCCGCACATGTGTGAAGAGTGCGGGAAAATATACCAGACACAGGCGGCATTGAAGTACCACCATTTAACGCATAAAGGCGAGAAGCCATTCGCTTGTCCACATTGCGATAAGTCGTTCACGGGCAAAATCGGACTTACGAAGCATTTGCGAGTGCACAGTGACGTCACAGTAAAGACTACCTACCCGTGTAAGATATGCGGGAAACAGTTCTCGACTGTCAGCAACAGATGGCGCCACATGTTTGTGCATGAGGGGACCATGCCTCACAAATGTGACGTGTGTCAGAAGACCTTCACATTTGCAAGTGAGAAGAGATACCATTACGAGCATAAGCATATGAAGATACCATACCCCAAGAAGAACAAGGAGAAACGAAGCGGTGTAACCACGGTGAGCAcatatgatacataa
Protein Sequence: MRCCVPWCKNDTRHIDKSLSLSFHSFPQEPLKSKWLEILGMKTCFTRSCVCSEHFSESDIHLTKRGLRKLAVDAVPIGKACRVCLVSDVKLYPLWKYNLNRAYEQLTGVMVSTKSTLPRYACVECAQRLLNSRSLISKSSISNALLQNLLKDERLSLETIKQIDRNANSLSSSLCTKLIDKYDAIYKTNEYTDSKLEYPNNDVGNVDTLKNEYIPNINDNLDLYKCEDDADRNIETANETDTVNTDNESDDEIDGSNEDAFHTNDKNEIDEHKDKCENISNVSEDEDSDELNESKTNKSEMTTSGPLIKVTKLSLEEQIADIEKRKDSKNFKCSLYKCMECFKGFLDERTYSTHMTKHSNASGDHVCKVCKNYYKTKTRLTQHVLASHRKKYSCSVCPFVTAHRNSALAHKNWHQGTKYTCAYCSTEFYKKTSYFSHIRIKHPSDFVCELCGHSFVSEKGIESHKNIKHLLDSNELPSDAPLCELCNVRFASEEALMCHLKVSARHATEPHRTGTERRKKGVPTQRWDSSCELCGIELNSAREYRSHFRRIHRDQNRTKYPPVRRPHMCEECGKIYQTQAALKYHHLTHKGEKPFACPHCDKSFTGKIGLTKHLRVHSDVTVKTTYPCKICGKQFSTVSNRWRHMFVHEGTMPHKCDVCQKTFTFASEKRYHYEHKHMKIPYPKKNKEKRSGVTTVSTYDT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00875651;
90% Identity: iTF_00875651;
80% Identity: iTF_00876247;