Lsin032450.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- -
- Assembly
- GCA_905404315.1
- Location
- FR990192.1:1014451-1015915[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00071 0.095 14.3 0.4 2 23 191 213 190 213 0.95 2 9 0.00049 0.066 14.8 0.8 1 23 218 241 218 241 0.96 3 9 1.4e-05 0.0019 19.6 1.2 3 23 246 266 244 266 0.95 4 9 0.00013 0.018 16.6 0.3 3 20 272 289 270 291 0.94 5 9 1.6e-05 0.0022 19.5 2.2 2 23 308 330 307 330 0.95 6 9 0.0099 1.3 10.7 0.9 1 23 336 358 336 358 0.97 7 9 8.2e-05 0.011 17.3 1.9 1 23 364 386 364 386 0.99 8 9 0.0057 0.77 11.5 1.3 1 23 392 415 392 415 0.96 9 9 4.8e-05 0.0065 18.0 3.7 1 23 420 442 420 442 0.99
Sequence Information
- Coding Sequence
- atGGTTGATAGAAGTAAGCTTATTAAGGCCGTGGTTCAAGGGAAACCAATATGCATTTTTTGTTTAAGTCAAGATATCAGTGATGAAACTGAATATCATATTGATGATGAAATTGTTGTCGATCAGGAGGACTCTCAGTGTTCAATAGTATTTTGGGATCTTTTGAAAGTTACTTTAGGTGAAGAAATAACTAATAGATTAACTCAGCGAGATacaatttgtttaaaatgtGCACAATCTTCTGTGCAGAGCTACAACTTCGTTACAAACACTAAGACAAACattacaaaacttgaaaaattaCTCGACATTATTAACAACAGTCTAGAAACCAAATCTTCAAATGGTAATAACTCCATTATTATATCACTGGAtccatatttaaacatacagACATTAATTGAAAAGCATAATTTATCAAATCAGATGAGTGCTTTACAAAAACTCCAGCCAGAGATCAAGAAAGAGTACAGTCACAATACAGACAACTCagatataaataagataaaatcaAGTTACCCCATGAAAACCATAGATATGGTGTATGACAAAAATGACACACagaatataaaatgtaagcAGTGCTTAAAAAACTATCCGTCATTAGCTAATTTACGAAATCACTACATAAGAGTACATGCACCAAAAACTTTTACCTGCCTCACTTGTAAAAAGAGTTTTGGAACAAAGTCAATACTAGAAGCACATCAAAATGAAAGCCATGTTACTGTAATCTGTGCAGAATGtggtaaaacatttaaaaatcgTCACACATTAAAAATGCATGAGATAAGCCATTACTATAAAGTTATCTGCAAGGATTGTGGCAGGGTCTACAGAAGTCATACAACATACAAAAGGCACATTGACCTTAATATATGTGGGCAGAAGTCACGAGCCTCACCATCAGATGCAAAGCTTACATGTGACTACTGCAATAAGAAGTATACACAGAAGGTTAGCTTACGAGTACACATTCAACATGAACATGGTAATTATAGATCCCATAAATGTGAATGGTGTCAGAAGAAATTCTGGGCACCCAGTCGATTAAAAGCTCACATAGTGAAACATACTCAAGATAAGCAGTTTCAATGCACAATTTGTAGCAATAGATTTGTAACCAAGGAATCTTTACTTTACCATACCCGTTCACATACTGGGGAGAAACCATACAAATGTAACTTCTGTGATATGAAGTTTGTATCTGCTTCACGAAAGGCTGATCACACAAAACGTATTCACCTGAATGCTGTATACCAATGTTcaatatgtaaaataaagtaTACTACCAAGATTTGCTTAGAAAAACACTTGCAGACACATAAAAAAAGTGACACAGATGTGTTCAAATACATAGAGCATTAG
- Protein Sequence
- MVDRSKLIKAVVQGKPICIFCLSQDISDETEYHIDDEIVVDQEDSQCSIVFWDLLKVTLGEEITNRLTQRDTICLKCAQSSVQSYNFVTNTKTNITKLEKLLDIINNSLETKSSNGNNSIIISLDPYLNIQTLIEKHNLSNQMSALQKLQPEIKKEYSHNTDNSDINKIKSSYPMKTIDMVYDKNDTQNIKCKQCLKNYPSLANLRNHYIRVHAPKTFTCLTCKKSFGTKSILEAHQNESHVTVICAECGKTFKNRHTLKMHEISHYYKVICKDCGRVYRSHTTYKRHIDLNICGQKSRASPSDAKLTCDYCNKKYTQKVSLRVHIQHEHGNYRSHKCEWCQKKFWAPSRLKAHIVKHTQDKQFQCTICSNRFVTKESLLYHTRSHTGEKPYKCNFCDMKFVSASRKADHTKRIHLNAVYQCSICKIKYTTKICLEKHLQTHKKSDTDVFKYIEH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00874739; iTF_00875604;
- 90% Identity
- iTF_00875604;
- 80% Identity
- -