Lsin026091.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- -
- Assembly
- GCA_905404315.1
- Location
- FR990182.1:3490262-3497284[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0015 0.2 13.3 1.0 1 23 169 191 169 191 0.97 2 10 0.046 6.2 8.6 0.1 3 23 218 238 217 238 0.96 3 10 0.00048 0.065 14.8 1.1 3 23 261 281 259 281 0.95 4 10 0.12 17 7.3 2.3 2 23 286 307 285 307 0.96 5 10 0.00081 0.11 14.1 2.5 1 23 314 337 314 337 0.95 6 10 0.019 2.6 9.8 1.0 1 23 343 366 343 366 0.88 7 10 2.9e-05 0.0039 18.7 1.6 1 23 372 395 372 395 0.97 8 10 0.00027 0.036 15.6 3.1 1 23 401 423 401 423 0.96 9 10 3.9e-06 0.00053 21.4 0.5 1 23 429 451 429 451 0.98 10 10 3.5e-06 0.00047 21.6 1.6 1 23 457 480 457 480 0.98
Sequence Information
- Coding Sequence
- ATGTTATCTCAACTGGACGGCGAACCAGATGGGAGATTAATATGTGCAACATGTGTCATAAGGTTACGTGAAGCGAACAGCTTTCGACTACAGGTCTTGTTATGTGAAGAAAGACTCTTAGCCAGGTTTCAAGATGATGATAAGCCAATAAAGGAAGAAATTATCATCAAGGATGAAGTTTCTCTGGATGCTGAGCCGATGTATGACGATGAACCTGCTGATGATATTCACAGTgatagcTTAGAACAACAAGAACATCCTAAGAAGAAAAGTACCAAGCATCACTCGAAGAGGAAAACAAAGAAAAGCAAGAGAaccaaagagaatataacagATGAAACACTTCTCAAAGTTGAAAGACTTAATAGGAGGCTGCAAGAGATGCAATATAATGACACTTTCCCGAAAgcagaaaaaaaagaagaaacatCACTATccttagaaaatattataacactGGTGGAGAATTCGTATGTGTGTCCATTCGACACATCATTTAGTGACTACTTCTGTGTTTACTGCAGAACTATATTTACTGATCCGATAAAATTAAGAGAGCATACATACACACATGACCCACAGACTATCAAAGACGTATTGGCCAAATACACAGcaacaaagaaaatacaacTCGACCTCTATAGAGTAGACTGTCGGCTGTGTACGGAAGTCATAACTGACATTGGCAGTTTGAAACGTCACCTAGCGTCACACGGGAAGACAGTTCACGAAGCGCCAAACGAGTTTTTGGAGTTTAAATTGACATCTGGAAAGCTGTTTTGTTTGGAATGTGGACGAGGATTTGCATTTTTTCACGCTCTAAAAAAACATATGGCACAGCACTTTGGCACGTGTATCTGCGATGTGTGCGGTGCACATTATTTCGAAGAACGAATGTTGTACCTTCATCAGAAAACTCACCAGAAGAGTGATGAGGTGTTCAAATGTGTTGAGTGCGGTAAAGAGTTCAAATCCAAATACACAAGGTATTTGCACATATTCAAGATGCATAAAAATGAAGCCGCATACCCTTGCAGTAAATGTGATGAAATGTTTTTCTCATACAGCCTTCGGTATCGTCATAAGATCGATGTTCACGGTGAAGAAAGACAATTTAAATGCgaagtctgtgacagatcataTGACAGCAGGAAATCCTTACGAGAACACAATAGAAGACTgcatttaaagatattaaagCATGCTTGTCATATGTGTGACAAACGTTTTTACCTACCTTCACGGTTAAAAGAACATTTGGCGACTCATACAGGTGAGAGAAACTTCAGGTGTGATTTTTGTGGAAAAACTTATCCGCGTCTAAGAGGTTTAAAAGTGCATATGCAGGCacatattatagataaaaaGTTTAAATGTGATTTGTGTGGGATTACCTTTGCACATAAAGTAAGTTTGAAGATTCATTTGAAGAGACAGCATCAAAATGAGAGTTTTAACCAGCCTAACTGA
- Protein Sequence
- MLSQLDGEPDGRLICATCVIRLREANSFRLQVLLCEERLLARFQDDDKPIKEEIIIKDEVSLDAEPMYDDEPADDIHSDSLEQQEHPKKKSTKHHSKRKTKKSKRTKENITDETLLKVERLNRRLQEMQYNDTFPKAEKKEETSLSLENIITLVENSYVCPFDTSFSDYFCVYCRTIFTDPIKLREHTYTHDPQTIKDVLAKYTATKKIQLDLYRVDCRLCTEVITDIGSLKRHLASHGKTVHEAPNEFLEFKLTSGKLFCLECGRGFAFFHALKKHMAQHFGTCICDVCGAHYFEERMLYLHQKTHQKSDEVFKCVECGKEFKSKYTRYLHIFKMHKNEAAYPCSKCDEMFFSYSLRYRHKIDVHGEERQFKCEVCDRSYDSRKSLREHNRRLHLKILKHACHMCDKRFYLPSRLKEHLATHTGERNFRCDFCGKTYPRLRGLKVHMQAHIIDKKFKCDLCGITFAHKVSLKIHLKRQHQNESFNQPN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00875602; iTF_00874748;
- 90% Identity
- iTF_00875602; iTF_00874748;
- 80% Identity
- iTF_00875602;