Lsin015956.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- -
- Assembly
- GCA_905404315.1
- Location
- FR990168.1:11287350-11337768[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.086 12 7.8 0.2 2 23 450 471 449 471 0.89 2 17 0.0041 0.55 11.9 0.0 1 23 481 504 481 504 0.95 3 17 0.028 3.8 9.3 3.6 2 23 624 645 623 645 0.95 4 17 0.51 68 5.3 2.6 1 23 656 679 656 680 0.91 5 17 0.00018 0.025 16.2 0.3 2 23 686 709 685 709 0.97 6 17 0.062 8.3 8.2 0.2 1 23 715 737 715 737 0.93 7 17 0.0019 0.26 13.0 3.3 1 23 743 765 743 765 0.98 8 17 0.81 1.1e+02 4.7 0.1 1 19 775 793 775 796 0.81 9 17 0.096 13 7.6 2.0 1 23 870 892 870 892 0.98 10 17 1.8 2.5e+02 3.6 7.2 1 23 899 921 899 921 0.95 11 17 0.0012 0.17 13.6 1.8 1 23 953 976 953 976 0.95 12 17 0.0035 0.47 12.1 0.7 1 23 983 1006 983 1006 0.97 13 17 0.088 12 7.7 0.0 2 23 1027 1049 1026 1049 0.93 14 17 1.2 1.6e+02 4.2 3.4 2 23 1072 1094 1071 1094 0.92 15 17 0.00037 0.049 15.2 2.0 2 23 1106 1127 1105 1127 0.97 16 17 3.1e-05 0.0042 18.6 0.1 1 23 1133 1155 1133 1155 0.98 17 17 0.00019 0.025 16.1 2.6 2 23 1162 1184 1161 1184 0.95
Sequence Information
- Coding Sequence
- ATGACTGACCCTCAACCATTGGTTCTCTGTATGGAGAACGTTAATGGAGATGAAGTGGCGTTGAAGATTGATCCGCATGATGACTTCAGACTATTTCTTGATAAAGCCAAATCCCTTCTAGGCTTTGAAGTAGACTTAAATTCTGTAACAGGCAATCAGCCTGTATCATTAGATGATAACATGTACCAGTTTCTGCTAAAATCTGAACAACACATGGGCACTACCTCTGAAGCACCTGCATACGATCCCGTACTTGATTCTAATAACAATGACGATTTGGTTTACATTCTTGATGACGGCACTCAGATCAGAGCTTCTCAGATACAATTTGACAATGAAGACCCTATTATAGATCTCTCGTCCGAGAGAATACCTTTTGTGCAGTACAATGATGACTATGTTGAAGATTGTTCGGAAAATCTGGAGAACGTCAGTATAAAAGATGTTCCGCTGGATAGCCCTGCTTCTAGATGGTCCATGCTAAACTCTAGCCCAAAGAATTTCGTGAATACCATACCATTTAAACAAGTTTGCAATAATACGTCAAATTTTGAAActcattttgctaaatatttGGAGTCAGTTGCTAAAACTTATACAACCTTGAACCCAGTTTCAAAAAAGGTATCTCCAAGGACGCTGAGTAAAGAGAGTTACAAAACAAACGAATATCAGAATAAAAACGATATTTTCACTCGTGAAGACGTTTTGAACATGTTTAAAGACTCTCCTGTAACTCCTTTACCGTAtgataaaagtataaattatgataaaagaAAGCATGCCCGTAAAACTGATCCTTTgagagttataaataaaaattggttttGTAAATCAGACCTAGGTTCAAATCAGAATCAAGAATGCTGTATATGTAGTCGAATTGTAGAAGATAATTTGGAAAAGATGTATTTATTTGATAACGAGGATCAACGTATACATAGATGCTCGCCGCAAAAGCGGATGACAATGCAATTGAAGATAATTTGCGAAAACTGTTTGGCGGAAAACTTTAAGCTCTGTCTTGTTAAAAGTCCTACGGAATCTCTTAATTCTGACGAgtatttagtaataaaaaataaccagcaatatatttttaaaaaggatACTGACGTTTCTTTGAAAAAACCAGAAGAAAAGGTTCAACAGAATAAAGAATTGAATATTAACCAAAGAACTGATGGAGAAAATGTGAGAGGTGATGTAAAAGATAGTTCCAGTGACGTAGAAATCGTAGAACCGGAGATTGAGATTGATAAAGTGATTGATAATCTTGATGATGCTGATGAAGAGGTTAAGGAGTTTCTGGGGAAGTACCAAGTTGCTAATGATAAAAGTCAGGAATTGAAATGCAGGTTTTGTGACAAAATATTCAGCGACGTGAAAGACGTAATGGATCATGGCGAGGAACATAAACATGACTTTGATGATGGCTCCGTATTTCCGTGTCCCTTGTGCGATTATGGATATGCAAATCTGAAATGGTTAAAGGGCCATCTCAAAGCGGCTCATGACAAGCCAAACGACGCGGAAGATGGCGCTGTTATTAAAAAGGAGGttgTCGCGGAACATCCACCGAAGGAATCGTCGCCTGTTGCTAACGGAACAGGAATTTTGGAGAAGACGTCTGTTAATGACAATGATGAAAAGGATATTAAAGAATCTCACCCGAATGAGGACGACACTAAAACTGTgcagcatataaaatttgaaacggAAATAAAGCAAGAGGCGATTGACAGCGACGACGAAGCCATCTGGATAGTTCACACTGGGGATGATGTGCAAGAAGAACAATTGCACAAACTGCTGAACGCCAATACGAAGGTGAAAAAGACTAAGAGCCGAGAGAACGCTTCGCAGATAGTCACGTGCCATAACTGTAACGAGTCGTTCTCGTCTAAAGTGAGACTCAAGTTCCATATGCAATTCCACGATAAAACGGACTTGCTGACACCAGAGGGATACTCGTGTAAGGAGTGCAGCCTTACTCTGGCGACGGAGACGGAGTTGTTCGACCATGTGCACTTCCAGCATCACAAGCAGAAGAAGTGGCAGTGCCCGGTCGAGGAGTGTGGAAAGATGTTCTTCTTGAGGGCGACGTTGACGAAGCACAGCCGGACGCACACAGACACGAGGCGCTACGTGTGCGTGACCTGCGGGAAGCGGTTCCTGGACAAACAGACGCTAGACGAACACGGCGTCACGCATTTACAGATTAAACCGTTCCAATGCCACATATGCCTTAAGCAGCTAACTCGGCGCTCTCGTCTTCGAATGCACCTGCGAGCTCACGAGGAGGAGGTCTGCATGAAACTGGTGTTCGCTTGTGGTGTCTGCAAGCGTGCGTTCAGGAACGACATCGAAGCTCAGGAACACACGGCGAAGTCTACAGAATGCATTGAAGAGTTCACGAAGATGTTGAAGGGTGAGGAGGTCGATCAATTGTCTCCCACCAGCGGCGTCGTCAGATATTCAAATAAATCTGTTACGTCGCTAAACGTACCGATACCGCGGGAGGCGAGCTCTGAAGATAGTGCCGCTATGATAAGCTCTCTGACTGACGCGGCGCGGTCTATCATCCGCGTGGTTCGTATCGAGAAGGCATTCCGCTGCGAATACTGTGAAGATGTGTTCTACCTGGAGCATTCCCTAAACTCACATCGCGCTAAGCATAAGGGTATCAAGAACCCATTTACGTGTCATATATGCAAAGTGAGCTTTGCGACCTATTCTAGGTGCACCACTCACAAGACCACTCACGGGTTCTACAAACGCAACGCCACTGAAGGAACCAGCGGTGGTGCGGGTAGTACTGGTATCCTAGGCTACGGAGGCTTCCCCGTTGTGAAGCACTTTTTGTGTGAGGACTGCGGCCGCTCGTACCTGCACTGGACGTACCTGCAGGTACACAGACGCATGAAGCACGTCAACGAGAACTTCCTCTTCAAATGCAACCAGTGCGAACTGACGTTTCCAAACAGttgGAGCGTTGCGTATCATAGGAAAAAAGTGCACGGCAAAACTGCACAGGAAGACGGTGGTACAACCAAGATTGCAAGACAGGATTATAAAATACCATGCCGCGATTGCGACGCGGTATTGCCTAACAAGGTCGCACTCTACAAGCACAGGCAGGACGAGCATTGCGACGACGCATTCGATATGGACGAGAATGAGGACTGGCCGGAGTCTGTGAACAAGGATAGCACGGTGTGCAACAAGTGTGGACATAACTTGCACAATGTTAACGCGCTACAGAAACATTTGCACGAAGTGCACGGAGTTCAGTCGGACAAACTGCACCCGCGTCTGAAGTGCCACATGTGCTCGCGAACGTTCCGCTCGGCGAGCGCGCGCGACGAGCACATGCGCGTGCACACGGGCGAGCGGCCGTACCCGTGCGACGTGTGTGGCGCGTCCTTTACACGCTCGACCGCGATGCGCAATCACCGCCTAGTACACTTGGCTGTGCGGGCTTGGTCGTGCTCGCGGTGTTCCAGAAGGTTCCGCATGCGTTCGGACCTGCGCACGCATATGAGACTCAAACACCCCGCCTACTTGGCGGTCATCGAGATTGAAGGCCTCAATCCATCACTGGAACAGATATATCAAAAGCTTGCGGTGCACAATATCAGCCAGCAAAAGGTTATCGAGATCAATATGATTTCCTTTGAGAAGGGCTCAACGAGCATCGTACCTGACTCCCGGCTTGCCCTGTCCATGTTGAACAACGTACCGCGCACTCCGATCATACGATCCAAGAGCGAATCACATGATATGTTTCAAGCGAGTTGCAGCCGGGACATGGATAAAGCTGCTTACACACCCGCGACGTTACAACGCGCTGAACAAATGAGCACCGACCCTAATAGAACCTATCCGATCATTAGCACAGATGCTATTCAACCTATAAACGTGCAAGTTCTTCTAGAAGACAACGCCCTGGTATCTAACCAATTGCTGCAGTATAGAAATGATATTGTTTTGCAATAA
- Protein Sequence
- MTDPQPLVLCMENVNGDEVALKIDPHDDFRLFLDKAKSLLGFEVDLNSVTGNQPVSLDDNMYQFLLKSEQHMGTTSEAPAYDPVLDSNNNDDLVYILDDGTQIRASQIQFDNEDPIIDLSSERIPFVQYNDDYVEDCSENLENVSIKDVPLDSPASRWSMLNSSPKNFVNTIPFKQVCNNTSNFETHFAKYLESVAKTYTTLNPVSKKVSPRTLSKESYKTNEYQNKNDIFTREDVLNMFKDSPVTPLPYDKSINYDKRKHARKTDPLRVINKNWFCKSDLGSNQNQECCICSRIVEDNLEKMYLFDNEDQRIHRCSPQKRMTMQLKIICENCLAENFKLCLVKSPTESLNSDEYLVIKNNQQYIFKKDTDVSLKKPEEKVQQNKELNINQRTDGENVRGDVKDSSSDVEIVEPEIEIDKVIDNLDDADEEVKEFLGKYQVANDKSQELKCRFCDKIFSDVKDVMDHGEEHKHDFDDGSVFPCPLCDYGYANLKWLKGHLKAAHDKPNDAEDGAVIKKEVVAEHPPKESSPVANGTGILEKTSVNDNDEKDIKESHPNEDDTKTVQHIKFETEIKQEAIDSDDEAIWIVHTGDDVQEEQLHKLLNANTKVKKTKSRENASQIVTCHNCNESFSSKVRLKFHMQFHDKTDLLTPEGYSCKECSLTLATETELFDHVHFQHHKQKKWQCPVEECGKMFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEEVCMKLVFACGVCKRAFRNDIEAQEHTAKSTECIEEFTKMLKGEEVDQLSPTSGVVRYSNKSVTSLNVPIPREASSEDSAAMISSLTDAARSIIRVVRIEKAFRCEYCEDVFYLEHSLNSHRAKHKGIKNPFTCHICKVSFATYSRCTTHKTTHGFYKRNATEGTSGGAGSTGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHVNENFLFKCNQCELTFPNSWSVAYHRKKVHGKTAQEDGGTTKIARQDYKIPCRDCDAVLPNKVALYKHRQDEHCDDAFDMDENEDWPESVNKDSTVCNKCGHNLHNVNALQKHLHEVHGVQSDKLHPRLKCHMCSRTFRSASARDEHMRVHTGERPYPCDVCGASFTRSTAMRNHRLVHLAVRAWSCSRCSRRFRMRSDLRTHMRLKHPAYLAVIEIEGLNPSLEQIYQKLAVHNISQQKVIEINMISFEKGSTSIVPDSRLALSMLNNVPRTPIIRSKSESHDMFQASCSRDMDKAAYTPATLQRAEQMSTDPNRTYPIISTDAIQPINVQVLLEDNALVSNQLLQYRNDIVLQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00874747;
- 90% Identity
- iTF_00874747;
- 80% Identity
- -