Lsin004999.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- -
- Assembly
- GCA_905404315.1
- Location
- FR990155.1:25373021-25374418[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00012 0.016 16.7 1.9 1 23 113 136 113 136 0.95 2 10 8.4e-05 0.011 17.2 3.4 3 23 145 166 144 166 0.96 3 10 0.42 57 5.6 5.4 2 23 174 196 173 196 0.94 4 10 2.8e-05 0.0038 18.7 0.1 2 23 204 226 203 226 0.93 5 10 0.00024 0.033 15.8 5.3 1 23 233 256 233 256 0.93 6 10 0.0061 0.83 11.4 6.3 1 23 262 285 262 285 0.94 7 10 4.1e-05 0.0055 18.2 0.3 2 23 293 314 292 314 0.97 8 10 0.0019 0.26 13.0 2.2 2 23 322 344 321 344 0.96 9 10 7.4e-05 0.01 17.4 3.2 2 23 351 373 350 373 0.94 10 10 5.6e-05 0.0075 17.8 3.8 1 23 382 404 382 404 0.97
Sequence Information
- Coding Sequence
- ATGGAGGACCAGATGCAAATGTATCACCAGATGCAGGGGACGTCATACGACCCGAAGTACGACGTCCCATATTCTGATCTGAAACTGGAAGAACAGCACTTCGCCAACCCTATGGATCCACAGAGCTTCGCGTCCACCATGGAACCGCAAGACTACGCTCTACCCAAAATGGAAGGAGAAACATCCAACCAAGAGCCGAAACTCCAAAGTGAGCCGGGGAAACCCATCAGATTCATTAGCGTGAACAGCTCACAATTGACAGATGAGCAAAGAGCCATGTACGAATCAGTTCTGGCCACCTGGAAACCAGTGATGTTCCCGAAGCAAAACAAACGCTACATCTGCGATAAATGCAATAAAGAGTTCAAAAACTACCAGAACTTATACCTGCATACAACCAGGGTACATTCTACAGAAGATTCAGCAGTACTGTGCGATATCTGCGACAAGTCATTCAAGAATAAACACTATTTATATATGCATAGAATGAATAAACATTATTCGGAGTCGGAAAAGTGTTTCTGCCAGTTTTGTCTGCAAGAGTTCCGCACTCGTCGAGCTCTTCATATGCATGTTAAGAGGGTCCACCCTAATACTTTGCCGGAAATAAAGTGCCAGGAATGCGGAAAAGAGTTTAGCGTTCCATACAAGTTGAGGTACCATATTGAAGCTGTCCATCGTCCGGATAAGGAGAAATACAAGTGTCATATCTGTGAGAAGATGTACAAAAGTCTTCTCAATCTGAATCGCCATTTGCACTTCCAACATTCTCAAGTTGAGCGTCATCCGTGCGTGTTTTGCTCGATGACATTCAAGTCGCGACATCATATGAAACGTCATATCCTGAACATCCACCCACCACTGGAGTCCAAAGTCCAGTGCCCCGAATGCTTGAAAGAATTCAAGAATGACCAGTATTTGAAGGAACATATGCAGGTACATTCGTCATTGGACACGAAAGTGAAATGCGATTTGTGCGATAAATTCTTTCATTCAGCCATCCGTTTGAAGAAGCACAAGAAGATTGTTCATCCCGATAAGCCCAAGATTCGCTGTGAAAAATGCGATAAAGAATTTGCGCACGCGCATTACTTGAAACGCCATAATAACTCTGTTCATGTGGACCTGAACGAGAGCAGTCAACACGAGTGCGACCAATGCGGAAAGAAATTCAAGATCCGCAGATATTTGAACAATCACTTGCAGAGACATGAACAGCAGCATCTGAAGCGTATCTCCCAAATGGTGAAAACTGTGATGGATGAAGGGCAGAAAGCACAGAAACCCAAGAAGCCCCGGCGGCCAAGGAAGTCCAGAAAAGAGATTGAGTTTGTGAAGTGTGAACCCGTCACTTCTACGGAAGAGAGTGAGTCATCTAGCGAGTCTGACTCGGagtaa
- Protein Sequence
- MEDQMQMYHQMQGTSYDPKYDVPYSDLKLEEQHFANPMDPQSFASTMEPQDYALPKMEGETSNQEPKLQSEPGKPIRFISVNSSQLTDEQRAMYESVLATWKPVMFPKQNKRYICDKCNKEFKNYQNLYLHTTRVHSTEDSAVLCDICDKSFKNKHYLYMHRMNKHYSESEKCFCQFCLQEFRTRRALHMHVKRVHPNTLPEIKCQECGKEFSVPYKLRYHIEAVHRPDKEKYKCHICEKMYKSLLNLNRHLHFQHSQVERHPCVFCSMTFKSRHHMKRHILNIHPPLESKVQCPECLKEFKNDQYLKEHMQVHSSLDTKVKCDLCDKFFHSAIRLKKHKKIVHPDKPKIRCEKCDKEFAHAHYLKRHNNSVHVDLNESSQHECDQCGKKFKIRRYLNNHLQRHEQQHLKRISQMVKTVMDEGQKAQKPKKPRRPRKSRKEIEFVKCEPVTSTEESESSSESDSE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00943106;
- 90% Identity
- iTF_00874729; iTF_00875593;
- 80% Identity
- iTF_00874729;