Lsin004398.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- zfh1
- Assembly
- GCA_905404315.1
- Location
- FR990155.1:19197954-19208392[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00013 0.017 16.7 5.3 1 23 103 125 103 125 0.98 2 8 2.4e-06 0.00032 22.1 2.1 1 23 129 151 129 151 0.95 3 8 0.041 5.6 8.8 0.1 2 23 159 179 159 179 0.90 4 8 4.8e-05 0.0065 18.0 0.6 1 21 185 205 185 210 0.94 5 8 5.6e-06 0.00075 20.9 2.5 1 23 219 242 219 242 0.97 6 8 7.2e-05 0.0097 17.4 0.6 1 23 248 271 248 271 0.97 7 8 0.00026 0.035 15.7 0.2 2 23 282 303 281 303 0.95 8 8 2.2e-06 0.00029 22.2 1.4 2 23 310 332 309 332 0.96
Sequence Information
- Coding Sequence
- ATGGCTGAGAAACTAAAAGAAATATGTTGTACTTGTCTAAGTACGAACAGAAAATTATATCCGTTATACCGGGTTCCTGATGGCGTTAACAGtctattcaatataatatctgCTATTCCTGAAGCATATAAGGATGGATTTTTTAGAGATCTTGCAAAGCTATCAGTGTGTTGGGAGTGCAGCGCAGTTCTATGTAAGCAATTTAAATTCAGAGATCAAGCAAGTTCGGCGCAAAGGGAATTATCGTTAATTGTTGATCGAAACAATGAGaaAGAGACATCGAAAGAGCAAGCAAGAAAGACGGTCCACGTTTGCGAAGATTGTGGCAAATGTTTTGATTCAGCAAGAAAGAAATATAACCACATGAGGAAACACAAATTTGGATTTAAGTGTAGTGTTTGTGATAAAACTTTTAGCTACAAATACCTGCTGGAGAAACATGGAAGtcAACATTGTGTGAGTGTCAAACGCGAGCAATGTCCAACTTGCGGTAAGATGATACGCTCAGAGTCGATGAGGGTCCACGCGGCGATACACACAGACCGCGACGGTTACACGTGTGTCATCTGCGACAAGCGGTTTGTATCGCGAGCCTCTTATGAGCAGCATTTGAAATACACACAGGCGCACAGCGAACCCAGTAGTATACTgaaATATAAATGTGGCCATTGCAATAAAGGATATCGGTCTAAAAGTGAATTGTTGGATCATATAAACTACCGACATTTGGGGAAAACTCGCCACGTTTGCCCGATTTGTGGAAAAGGCTTGGCAACACCGCGTTGCGTCACACGTCACGTGAGACGCGCACATGAAGGCGTCCAAGAGAAGGTGAAGGATAAGATGTGCCAAATCTGCGGGAATGCTTTCAGGgaCAGGAAAGCCCTTCGAGAACATGAATCAATACACACCGGCGAGAGACCGCTCTCGTGTGATGTCTGTGGTCGGAAGTTTCGACAGAGTTCCTCTTTGTACACGCATAAACGAAGAGTACATAACGTAAAACCTAAGTCTAAGTCCATTATTATTGATGTTTGTGAAAATGTTTCTAGACCTCaaactaaaatttga
- Protein Sequence
- MAEKLKEICCTCLSTNRKLYPLYRVPDGVNSLFNIISAIPEAYKDGFFRDLAKLSVCWECSAVLCKQFKFRDQASSAQRELSLIVDRNNEKETSKEQARKTVHVCEDCGKCFDSARKKYNHMRKHKFGFKCSVCDKTFSYKYLLEKHGSQHCVSVKREQCPTCGKMIRSESMRVHAAIHTDRDGYTCVICDKRFVSRASYEQHLKYTQAHSEPSSILKYKCGHCNKGYRSKSELLDHINYRHLGKTRHVCPICGKGLATPRCVTRHVRRAHEGVQEKVKDKMCQICGNAFRDRKALREHESIHTGERPLSCDVCGRKFRQSSSLYTHKRRVHNVKPKSKSIIIDVCENVSRPQTKI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -