Basic Information

Insect: Leptidea sinapis
Gene Symbol: -
Assembly: GCA_905404315.1
Location: FR990153.1:10514781-10533438[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0092 1.2 10.8 5.2 1 23 172 194 172 194 0.97

2 11 3.4e-05 0.0046 18.5 2.7 1 23 200 222 200 222 0.98

3 11 6.8e-05 0.0092 17.5 3.0 3 23 230 251 228 251 0.95

4 11 7.2e-05 0.0098 17.4 1.9 1 23 257 279 257 279 0.98

5 11 0.00067 0.09 14.4 3.8 1 23 285 307 285 307 0.99

6 11 3.5e-05 0.0047 18.4 1.2 1 23 313 335 313 335 0.98

7 11 0.00088 0.12 14.0 0.7 1 23 343 366 343 366 0.97

8 11 0.023 3.1 9.5 5.1 2 23 373 394 372 394 0.96

9 11 0.00018 0.024 16.2 2.4 1 23 400 422 400 422 0.99

10 11 5.8e-06 0.00078 20.9 2.3 1 23 428 451 428 451 0.96

11 11 6.1e-06 0.00083 20.8 2.3 1 23 465 487 465 487 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0092	1.2	10.8	5.2	1	23	172	194	172	194	0.97
2	11	3.4e-05	0.0046	18.5	2.7	1	23	200	222	200	222	0.98
3	11	6.8e-05	0.0092	17.5	3.0	3	23	230	251	228	251	0.95
4	11	7.2e-05	0.0098	17.4	1.9	1	23	257	279	257	279	0.98
5	11	0.00067	0.09	14.4	3.8	1	23	285	307	285	307	0.99
6	11	3.5e-05	0.0047	18.4	1.2	1	23	313	335	313	335	0.98
7	11	0.00088	0.12	14.0	0.7	1	23	343	366	343	366	0.97
8	11	0.023	3.1	9.5	5.1	2	23	373	394	372	394	0.96
9	11	0.00018	0.024	16.2	2.4	1	23	400	422	400	422	0.99
10	11	5.8e-06	0.00078	20.9	2.3	1	23	428	451	428	451	0.96
11	11	6.1e-06	0.00083	20.8	2.3	1	23	465	487	465	487	0.97

Sequence Information

Coding Sequence: ATGCCACCACCTGACGATGAAGTGCGCAAGGGTAAAGAAATGCTTTTACAAACATATCTGGCATCGTTAGATCAACATGCTCCCAGATCCTCTACATCTACagGTGGAGAGCCCAAAACAGCAACTGATAAAAATGTTGCTGCAGCAGAGGCAGATAACAGAAATGAAGCCGAAGATGGCATAACTTACTATGTGGATGAGTCGGGGAAGTACTATTATCGACCCACTATAAATCCGaATCAAGAAGAGCCAGTATATGTGGATGGGGAGTTCTATCAAACTCTTGCGTTGGTGCCCTCACAAACAGAAAATGGAGAAGTAACCTATGTTGTTGTTGTGCAAGAAGATAGTAAGGCCGGAGTGAAGCAAGAGAAGAATACTGATGATGTTTATCAATTTGAAGAAGAGGAAGAGGAGGACGATGTCATCATTGTTGAAGAAGAGTCACAGAAGCTCCAGAAGCAGCAAAAGAAATCTAAGCAGACGACTAGACACCATCGTAATGGCTCACATTTTGATTGCAAACTATGCAGTTATAAAAGCCACAGAAGGTACTTGCTTATGCGTCACATGAAAAGTCATTCTGAACAGAGGCCCCACCAGTGTGATGTCTGCGAACGGGGATTCAAGACCAGCACATCATTGCagaatcacaaaaatatgcatAATGGGGTCAAGCCACATCTTTGCAAATACTGCAAGAACTCTTTTACGACTTCTggcGAGCTTGTTCGCCACATCCGCTACAAGCACACCCATGAGAAACCACATCGCTGTACAGAGTGTGATTATGCTTCAGTGGAGCTATCCAAATTGAGAAGGCATATGCGCTCCCACACTGGTGAACGACCTTACCAGTGCCAGCATTGCACGTACGCATCTCCAGATACGTTTAAGCTGAAGCGCCATCTACGCACGCATACTGGAGAAAAACCGTATAAGTGCGATCTTTGCAGCATGCGATTCACACAATCCAATTCATTGAAGGCGCACAAGCTTATTCACAATGTTGATGAAAAGCCTGTTTTTGAGTGTGAGCTCTGCCCAGCGAAGTGTGGTAGAAAGACTGATTTAAGGATTCATATCCAGAAGCTACATACATCTGAGAAGCCTCTCAAATGCAAGCGCTGTGGGAAAATGTTCCCTGATAAATATACCTGCAAGATGCATAATAAGacCCACGAAGGGGAGAAATGCTATAAATGCAAGCTTTGCCCATACGCCTCAGTAACTTTACGTCACCTGAAGTCTCACATGCTCAAGCATACAGGGGAAAAACCATTTGTATGTGACCAATGCAATCAATCCTTCAGGCAGAAGCAACTCTTACGTCGCCATCAGAATTTATATCATAATCCTGACTATAAGCCGACACCACCGAAGGAGAAAACTCACACTTGTCAAGAGTGCAGCCGTACATTCGCTCACAAGGGCAATCTTATACGCCATTTGGCTATTCATGACCCTGATTCAAATCATAAGGCACATGCTCATGCACTTAAAATTGGCAGACAGAAGAAATTACAGATTGTTGATGGTCAAGTGACGGTTACTGAACCTGAGGTTGTGTGTGATGAAATAGCCACTGTGACACCAGTGCAACACATTGATGAAGAAAACAATGCTAACGATGATAACAATGTTGAAGAAGACAATGCCGAAGAAAATGATGAAGATGTGATAACTGTTGCCAACATGGGAGGTCAACGATTTGTGTTGATGATGGAGATGGTGGATGGTGCACATGGCTCTAGAGAAGAAGTGACAGTCCTACCTTCGATTTCGTTGGATTGCGATGATGATAatgAAATACCTGATGctgaagaagaaaatgatcatGAGAGCAATGCTGAGCCAGATGTAGATAAATGCTTTGGTTTTGGgGATGAGGATGAAGATGACGAGGATGAAGAGGAGGACGACATGGACGACGTGGAGTATGATGAACAACAAGAAGTTGAAGAGAACGAAGTagaggaagaagaagaagcagaagatgatgatgatatagagGAGATAATTGATGACGACCAAGATGATGGATTGAATCTAGTAGAAGTGATGATTGAATATGACGAATCACAGGAAAATGCCAACTAA
Protein Sequence: MPPPDDEVRKGKEMLLQTYLASLDQHAPRSSTSTGGEPKTATDKNVAAAEADNRNEAEDGITYYVDESGKYYYRPTINPNQEEPVYVDGEFYQTLALVPSQTENGEVTYVVVVQEDSKAGVKQEKNTDDVYQFEEEEEEDDVIIVEEESQKLQKQQKKSKQTTRHHRNGSHFDCKLCSYKSHRRYLLMRHMKSHSEQRPHQCDVCERGFKTSTSLQNHKNMHNGVKPHLCKYCKNSFTTSGELVRHIRYKHTHEKPHRCTECDYASVELSKLRRHMRSHTGERPYQCQHCTYASPDTFKLKRHLRTHTGEKPYKCDLCSMRFTQSNSLKAHKLIHNVDEKPVFECELCPAKCGRKTDLRIHIQKLHTSEKPLKCKRCGKMFPDKYTCKMHNKTHEGEKCYKCKLCPYASVTLRHLKSHMLKHTGEKPFVCDQCNQSFRQKQLLRRHQNLYHNPDYKPTPPKEKTHTCQECSRTFAHKGNLIRHLAIHDPDSNHKAHAHALKIGRQKKLQIVDGQVTVTEPEVVCDEIATVTPVQHIDEENNANDDNNVEEDNAEENDEDVITVANMGGQRFVLMMEMVDGAHGSREEVTVLPSISLDCDDDNEIPDAEEENDHESNAEPDVDKCFGFGDEDEDDEDEEEDDMDDVEYDEQQEVEENEVEEEEEAEDDDDIEEIIDDDQDDGLNLVEVMIEYDESQENAN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00874710; iTF_00875575;
90% Identity: iTF_00874710; iTF_00875575;
80% Identity: iTF_00875575;