Basic Information

Insect: Leptidea sinapis
Gene Symbol: -
Assembly: GCA_905404315.1
Location: FR990173.1:3003702-3007123[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.4e-05 0.0019 19.6 2.4 1 23 204 226 204 226 0.97

2 11 6.4e-05 0.0087 17.6 0.3 2 23 233 255 232 255 0.96

3 11 0.00057 0.077 14.6 0.3 1 23 262 284 262 284 0.97

4 11 0.1 14 7.5 3.0 1 23 291 313 291 313 0.97

5 11 3 4e+02 2.9 1.3 3 23 321 341 319 341 0.89

6 11 0.00022 0.03 15.9 0.3 1 23 347 370 347 370 0.96

7 11 0.0016 0.21 13.2 1.0 2 23 376 395 375 395 0.97

8 11 3.9e-07 5.2e-05 24.6 1.2 1 23 401 423 401 423 0.97

9 11 7.3e-07 9.8e-05 23.7 0.9 1 23 429 451 429 451 0.99

10 11 2.7e-05 0.0037 18.8 0.6 1 23 457 480 457 480 0.97

11 11 0.0017 0.24 13.1 0.7 1 21 486 506 486 507 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.4e-05	0.0019	19.6	2.4	1	23	204	226	204	226	0.97
2	11	6.4e-05	0.0087	17.6	0.3	2	23	233	255	232	255	0.96
3	11	0.00057	0.077	14.6	0.3	1	23	262	284	262	284	0.97
4	11	0.1	14	7.5	3.0	1	23	291	313	291	313	0.97
5	11	3	4e+02	2.9	1.3	3	23	321	341	319	341	0.89
6	11	0.00022	0.03	15.9	0.3	1	23	347	370	347	370	0.96
7	11	0.0016	0.21	13.2	1.0	2	23	376	395	375	395	0.97
8	11	3.9e-07	5.2e-05	24.6	1.2	1	23	401	423	401	423	0.97
9	11	7.3e-07	9.8e-05	23.7	0.9	1	23	429	451	429	451	0.99
10	11	2.7e-05	0.0037	18.8	0.6	1	23	457	480	457	480	0.97
11	11	0.0017	0.24	13.1	0.7	1	21	486	506	486	507	0.93

Sequence Information

Coding Sequence: ATGGCTAATGTAAAGGCTAGAGTTAACACTTCTAAAACTTCTAATACTAATAAGAAGGGTAAAGTTGGCAGGCCCAGAAAATTAACAAGTGTTAAAAATGTAAAGGACAAGAATATGGTGCTTAAAAAGTTTAATACAAGGTCAAGTGGTAAGATTTCAAAGGCAAAAGTATTACTAGACCCTAGAGTTGTCCGTGATAAAAATGACAAGGAAGCAGATGGAAAtcaatctaaattaaaaaaactcttgTTGCGTTCAGGGCATatcagatataaaaataaatttgatttcaaTGTGTTGGATGAAATATTAAAGAGCGAACTTTTGATTAAAGAGCATACTGAGAAACTGTCTGCTAAGATAGCAAAAAATACTAtaccaaagaaaaaaaataaaactaatactaGCAAATGTCAGGAATCTAGAAAAGAGACAAAGAGCAATGGTTTGTTAGAAGAGCCTAGAACTATAAGTCCGAGTGGGCTCATTCATAAAAGACTGGGTCAGGAAGGACAGTCTGAGGTATATCCAAACACCAATAATTTTCCTAAAAATATAAGTGATGAAAAAATATCAGAAATTCTTGGATGCAAAAGCattggtaaaatatttatatgcaaCTACTGCCACAAAGGATTTAATAGTAAAGAGACTATAAAAAGACATATAATGATTCATATGAATGTACCAAATATACCTTGCCCACAATGTAACCGAATTTTTAGCAATACTTTTTATCTAGCAGCTCATACTAGAAGACAACATCCTAATTGGGAAAAACATTATATGTGTAATATTTGCGACATGCCATTTTTACTGAAGTCCAATTTAAAAGTGCATTTAACCAGTCATAgccaaaaagaaaaaatgtttaaatgtatttattgcaaaGAAAAATATCAAGATCAACATGCACTGGTACAACATGAGAAGAAGCACTTAGTTgatgataaatatttatgtatcatTTGTGATATGGCCTTCGATTGCAGAAATAGACTAACAAGTCATTATAGAATTCATAGAAATGTAAAAGACTTTATATGTCAGGAATGTGGCAAAGGATTTTTAAGACTGAATTCATTAAGGCGGCATGTGCAAGTCAGTCATTCTGGACACCGTTTACAGTGCCCtgtatgtaataaaagtttgaaAGGTCATTTAGCAGAACATATGCGCACTCACAACAACAAAAGGCCCCATGAGTGCCCAGATTGTGGCCAGCGTTTCACTCAATCAACTCAGTTGACAGTCCATCGAAGAGCTCACACAGGAGCTCGTCCATACACTTGCAGAATCTGTGATAAGCCATTCTCACATTCAAATGCTTTGATGTTGCACATTcgtatacatacaggtgaaaaaCCTTTTAGTTGTGCAATGTGTCCAATGTCTTTTTCACAACTGCCACACATGAAAGCACATATGCGCAATATACATGGAAAAGTGAATCCATATCGATGTCCTAAATGTgaccaattttttaaattaaaagctGATTTGGATAGTCACAGTAAAAGTTGTAAGAAAAGTAAGACTAATGCAAAGGCATCACAAGATGATAAATTGGAAGAGGCGGAAATTACAAATAGGCTCACACGTATGAGATTCCTTCTAGCACTGCTGCTCACCATGATTGCAACCAAAGACAAGCTCAAGTATTTGGGATTCAACAAACGATTAATTGATGAACTTTTAATGGAATCACTGGAGGCAATGGGCCACAAACCCTGCAAGGATTCTACTCTTACACCGTTTGACCGTCTCCAGATCAATATACAGATGTTGTTAGAGGGTACAGTGCCCACAGATCAGATGGATATGTTCAAAAAGGAATCTAAAACAATAGAGCAAATTTTGGAATTGCTGACTGATGAGAAAAGGCGACCTTGA
Protein Sequence: MANVKARVNTSKTSNTNKKGKVGRPRKLTSVKNVKDKNMVLKKFNTRSSGKISKAKVLLDPRVVRDKNDKEADGNQSKLKKLLLRSGHIRYKNKFDFNVLDEILKSELLIKEHTEKLSAKIAKNTIPKKKNKTNTSKCQESRKETKSNGLLEEPRTISPSGLIHKRLGQEGQSEVYPNTNNFPKNISDEKISEILGCKSIGKIFICNYCHKGFNSKETIKRHIMIHMNVPNIPCPQCNRIFSNTFYLAAHTRRQHPNWEKHYMCNICDMPFLLKSNLKVHLTSHSQKEKMFKCIYCKEKYQDQHALVQHEKKHLVDDKYLCIICDMAFDCRNRLTSHYRIHRNVKDFICQECGKGFLRLNSLRRHVQVSHSGHRLQCPVCNKSLKGHLAEHMRTHNNKRPHECPDCGQRFTQSTQLTVHRRAHTGARPYTCRICDKPFSHSNALMLHIRIHTGEKPFSCAMCPMSFSQLPHMKAHMRNIHGKVNPYRCPKCDQFFKLKADLDSHSKSCKKSKTNAKASQDDKLEEAEITNRLTRMRFLLALLLTMIATKDKLKYLGFNKRLIDELLMESLEAMGHKPCKDSTLTPFDRLQINIQMLLEGTVPTDQMDMFKKESKTIEQILELLTDEKRRP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00875561;
90% Identity: iTF_00875561;
80% Identity: iTF_00875561;