Basic Information

Insect: Leptidea sinapis
Gene Symbol: -
Assembly: GCA_905404315.1
Location: FR990180.1:2517790-2538305[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00029 0.038 15.6 3.4 1 23 231 253 231 253 0.98

2 11 0.00019 0.025 16.1 6.6 1 23 259 281 259 281 0.96

3 11 0.0018 0.24 13.0 6.9 1 23 287 309 287 309 0.98

4 11 0.0004 0.054 15.1 1.0 1 23 315 337 315 337 0.97

5 11 7.5e-06 0.001 20.5 0.9 1 23 343 365 343 365 0.97

6 11 3.4e-06 0.00045 21.6 0.1 1 23 371 393 371 393 0.98

7 11 0.00022 0.03 15.9 0.3 1 23 398 420 398 420 0.96

8 11 0.014 1.8 10.3 1.3 3 19 428 444 427 450 0.90

9 11 9.4e-05 0.013 17.1 0.7 3 23 568 588 566 588 0.97

10 11 0.0021 0.28 12.8 1.4 1 22 650 671 650 671 0.93

11 11 1.3e-05 0.0018 19.8 4.1 1 23 682 704 682 704 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00029	0.038	15.6	3.4	1	23	231	253	231	253	0.98
2	11	0.00019	0.025	16.1	6.6	1	23	259	281	259	281	0.96
3	11	0.0018	0.24	13.0	6.9	1	23	287	309	287	309	0.98
4	11	0.0004	0.054	15.1	1.0	1	23	315	337	315	337	0.97
5	11	7.5e-06	0.001	20.5	0.9	1	23	343	365	343	365	0.97
6	11	3.4e-06	0.00045	21.6	0.1	1	23	371	393	371	393	0.98
7	11	0.00022	0.03	15.9	0.3	1	23	398	420	398	420	0.96
8	11	0.014	1.8	10.3	1.3	3	19	428	444	427	450	0.90
9	11	9.4e-05	0.013	17.1	0.7	3	23	568	588	566	588	0.97
10	11	0.0021	0.28	12.8	1.4	1	22	650	671	650	671	0.93
11	11	1.3e-05	0.0018	19.8	4.1	1	23	682	704	682	704	0.97

Sequence Information

Coding Sequence: ATGTGTATGCCAACACCAACAAATGTGTCTGGCTTTGCTTATTCGTGGGGTTTTACAAGCTCTGCGGATCTCACGAAGTGTGAGGTGGACACACCAGGCAGTTTGAGTTATACTTTAGGCAATAcgGTTTCTCCTGAGACAACCCTAACTGTTATGTCCCATAAGTCTCCGCAGGTACAGGAGAAAGTTGGGACTGTGACTGTGGCATCTAATAGTGCAGCTCAAGTTACTAGAGTAGTTACTACTGGCACACCAGGGGGAGGCAGAAGGGCTATGTTTGTGCTTAATGAATCACCAACCCAAACAATAAATAGAGTTTCACAACAAAATCAGACAACAAGTATACAAAGTGCATCAAATCTTGCATCTAAGCCATTCATGACTCCTCTTGGTCCAATCCAGTTAACAGCTGAggaatgtaatgaaatattgatGAAACGAGCCCTTCAAGCCCAAGGCATCGCTACTCCAGTCATTGATGCTTCTCAGTTAAATCATACATTACTAAATGGTGCAATAAAAAGTTTAGCAGAAGTGACAACCCAGCAAAACCAAACAGAAACAATACAGACCACTCCAGTTCATCAACATCATTTACTCCATACAAAACAAGAACCAGGGACAACTAATAATTCACCAAAAACAGTGCAAATGCAACCACAGCAGCAGGCCCCTGTGAAAGAACGCCCTTATTCCTGTGATGAGTGTGGAAAATCATTTCTTCTTAAGCATCATTTAACGACACATGCAAGAGTGCATACAGGTGAAAGACCACACGTGTGTGGACACTGTGGCAAGGCATTTGCAAGGAAGCACTGTTTGAACACACATTTGTTATTGCATTCCGCTGACAGACCATACCGATGTCATGAGTGTAAAATGGCTTTTACATTGAAACATCATCTTGTTACACATTCAAGGGTTCATAGTAGAGATCGTCCGTTTATCTGTGGCGAGTGTGGACGAGGTTTTCCGTTGAAACGACATCTAGTGACACACACGAAGTACCACGCTGGAGAGAGACCGTATGTCTGCAATGAATGTGGAGAAAGCTTTGCGCAAAAGgAACATTTGGTAATGCACAGCAGGTTTCATGGATCACTGTCGCCATTTGTATGTCCTGATTGTGGCCTCGCGTTTGCAAGGAAGTTCCAACTGGTGAATCATGGCAGGGTCCATGGCAGAGTGCCCCATGCTTGTCCAGTGTGTGGCAAGGAGTTCCTCCAAAAAAGAACACTAGTTGCTCATTTGAAGATACACACAGGAGAAGGAACAGTCGCCTGCTTTGAATGTGGCGAAGCTTTCAAAGGTAAAGAGGAATTGCAACAGCATTGCAAAATGACAAGGCATTGCTTATCGACAAACTCGACACAGAATCAACAAACACAGACCCAGCAGCAAGTGCAGCAACAGGCGCAGCAACAAGCGCAACAACAAGCACAGCAACAAGCGCAGCAACAAGCACAGCAGCAAGCGCAACAACAAGCGCAACAACAAGCACAACAACAAGCACAACAACAAGCACAACAACAAGCGCAGCAACAAGCTCAGCAACACGCACAGCAACAGGCTCAACAACAAGCACAGCAACAGGTCCAGCAACAAACTGTTATAAAACAGGATGAATTCAAGCCACAAATTGTACAGGTTATTGGTGCTGATGGTTCATTGATATCAGAGAAAGCAACCCCTGGCTATGGATGTCCTGAGTGTGGATCTTGCTTTAATACTAAGGAAGCGCTGTCGTTACACTTGCGGCTGCACGCGGGCGACCGCACGTGTGTGACGGACCTGTGCGCTCTCACCGCCGCGCTGCAACCCTCGCTCGTTGCGCACAATCAACCTATCCAGATCATATCCTCAAATCAACCAAATAATGTCGTTCATACACAAGTAATAGCCACGAATCCACCGAGACACGCCGTAGCGCTACCGAGACCGAAGTTACACTTCTGTGTGGACTGTGGGAAGGGATTCTCAGCGAAGCATGGTCTTCTGGCGCACCACAGGAGAAATCCGGAGGGTAGTTGTACATTACGGACGCATGTGTGTGACAACTGTGGCAAGGCTTTCTATCAGAAGAACCATCTGATGTTGCACCAGCGGCAGCATATGGACCTTCCCTCCAGAAACtCACAATCACAGCAAGTAGCCCAGCAACAGGCGCAGCAACAAGCGCAGCAACAGGCGGCCCAGCAAGCGGCGCAGCAGGTTCAGCAACAAGTGCAGCAGCAACAGGTCCAGCAACACGTGCAGCAACAGACGCTTGAAATGGACGACCAGCAACCACATATACAAGTGGTGACGAATCGGTCTGGGCAGGTGATAGGCAACCAGATAATGGTGGGCTCGCGGAGGCTGCTACCCTCACAGCTGCACATAGTCTCCAGAGATGGGAAACCGCTGCACCACATCACCAAACGGGAAAACGATGATGTTAAAGAAGTAGGCGGCCTAGTGGTCGCAACTGGGCGAGGAGGCGGCCTCATCAAGTACGAAATCGCGATACCTCAGAACAACTCCGGTGTTGTACAAGTGCAGCAACTTGACTGA
Protein Sequence: MCMPTPTNVSGFAYSWGFTSSADLTKCEVDTPGSLSYTLGNTVSPETTLTVMSHKSPQVQEKVGTVTVASNSAAQVTRVVTTGTPGGGRRAMFVLNESPTQTINRVSQQNQTTSIQSASNLASKPFMTPLGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGAIKSLAEVTTQQNQTETIQTTPVHQHHLLHTKQEPGTTNNSPKTVQMQPQQQAPVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCGHCGKAFARKHCLNTHLLLHSADRPYRCHECKMAFTLKHHLVTHSRVHSRDRPFICGECGRGFPLKRHLVTHTKYHAGERPYVCNECGESFAQKEHLVMHSRFHGSLSPFVCPDCGLAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHLKIHTGEGTVACFECGEAFKGKEELQQHCKMTRHCLSTNSTQNQQTQTQQQVQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQHAQQQAQQQAQQQVQQQTVIKQDEFKPQIVQVIGADGSLISEKATPGYGCPECGSCFNTKEALSLHLRLHAGDRTCVTDLCALTAALQPSLVAHNQPIQIISSNQPNNVVHTQVIATNPPRHAVALPRPKLHFCVDCGKGFSAKHGLLAHHRRNPEGSCTLRTHVCDNCGKAFYQKNHLMLHQRQHMDLPSRNSQSQQVAQQQAQQQAQQQAAQQAAQQVQQQVQQQQVQQHVQQQTLEMDDQQPHIQVVTNRSGQVIGNQIMVGSRRLLPSQLHIVSRDGKPLHHITKRENDDVKEVGGLVVATGRGGGLIKYEIAIPQNNSGVVQVQQLD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00430852;
90% Identity: iTF_00874690;
80% Identity: iTF_00874690;