Basic Information

Insect: Leptidea sinapis
Gene Symbol: -
Assembly: GCA_905404315.1
Location: FR990189.1:5109681-5123906[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.4 7.3e+02 2.1 0.1 3 17 55 69 54 70 0.87

2 10 0.00046 0.061 14.9 1.4 2 20 253 271 252 274 0.94

3 10 0.00062 0.084 14.5 0.5 1 23 280 302 280 302 0.97

4 10 2e-06 0.00028 22.3 2.4 1 23 308 330 308 330 0.98

5 10 1.6e-06 0.00021 22.7 2.5 1 23 336 358 336 358 0.98

6 10 1.1e-05 0.0015 20.0 0.1 1 23 364 386 364 386 0.96

7 10 1.2e-06 0.00017 23.0 0.4 1 23 392 414 392 414 0.98

8 10 2.5e-05 0.0034 18.9 3.2 1 23 420 442 420 442 0.99

9 10 0.00011 0.015 16.9 0.8 5 23 451 469 448 469 0.95

10 10 3.1e-06 0.00041 21.8 5.4 1 23 475 498 475 498 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.4	7.3e+02	2.1	0.1	3	17	55	69	54	70	0.87
2	10	0.00046	0.061	14.9	1.4	2	20	253	271	252	274	0.94
3	10	0.00062	0.084	14.5	0.5	1	23	280	302	280	302	0.97
4	10	2e-06	0.00028	22.3	2.4	1	23	308	330	308	330	0.98
5	10	1.6e-06	0.00021	22.7	2.5	1	23	336	358	336	358	0.98
6	10	1.1e-05	0.0015	20.0	0.1	1	23	364	386	364	386	0.96
7	10	1.2e-06	0.00017	23.0	0.4	1	23	392	414	392	414	0.98
8	10	2.5e-05	0.0034	18.9	3.2	1	23	420	442	420	442	0.99
9	10	0.00011	0.015	16.9	0.8	5	23	451	469	448	469	0.95
10	10	3.1e-06	0.00041	21.8	5.4	1	23	475	498	475	498	0.98

Sequence Information

Coding Sequence: ATGGATTGTAATGATATTTGCCGTGTTTGCCTTCAAAGAAATCCGTTGGCGTTTGATATATTCACATGTTTTTGCTgggaaaaaaatatagtttatgcAGATATGTTGTCCTATTGCACAAAAATtgttCCTTCCGAAAACGATGGTCTTCCTCGTAATATATGTGGTGATTGTTCTCGTCATTTGAAACAGGCCTATTCATTTATAGCACAGTATATTGTAAATGACAAAAAGTTGAAAGATATTTTAACTACATCAGTGATCGAAAGAAACAATTGTCCCATTGAAAAAGTTGTACAAAGCTATGAAAATGATTGTATAAAGAGTGAATTAGTATCACAGGCATCTGATTCAATAATTGCGATTGAAAAAGAAGAAGATGATGAGTTTAAATCAGaaaTTACCAGTGATTTTGAATGTACTGATGAATTCATCCTACCTACAGATGTGAAGAAAGAGATAGAAGGGTCACACACATTCTTTGATCGATCAAAAGCTTTGAGTTCAAAATCAAACGATAAAGATGATGCTTGCAATGGCAACATAGATATTGAGAAATTTGTAGCAGATAATAGTGATAATAGTAATGTAATTAAAGGAGATGATGTTAATGTTGAAAGAGTGAAGAAAAAACGTGGCAGAAAGGCAAAAGAAGTCAATAAAAGTGTTAATGGTAATATTGTATGCAACAATGAACCTGTATCGTCGCTGAAAGCGAAAACTGTTTCGGAAGCATCGCGAAACAGAGTTCCCCAGCAATGCGAGGAGTGCGGAAAGGTGCTCAGCTCCATGAGCAATCTGACCACTCACAAGATATGCCACACCAACCTGCGACGGTACAAGTGTAGCGAGTGTCCTGCCGCTTTCAAAGGTCACAGTGGCTTAGTACAGCACAGGACTCTTCACACTGGCGAGAAGCCTTACCACTGCGAGTATTGTTCAAAACAATTCCGTAGGAAACCAGCCCTCATCAACCACATACGAATGCACATGGGTGAAAAACTATACAGCTGTAAGATTTGTTCGAAGCGCTTCGTGCAAAGTTCCCAGATGTTTGTTCACATGAAGCGTCACTCCGGCATCAAGAGCTATCTGTGTCAGGAATGTGGAAAAGGTTTCTACATAAAGGCTGATCTGCAAGTCCACCAACGGATCCACAGCGGTGAGAAGCCGTACTCATGCTACCTGTGCTCGAAGACGTTCGCCACCTCGGGGAACCTGTCCATTCACATCCGGATACACAACAAGGAAGTTAGaTACAAGTGCAAGTTCTGCGGGCGCGGGTTCGTGACCTGCAGCGCCTTCAACGTGCACGTGAAGCGGCACAAAGGCCAGAAGGACTACCAGTGCGAGTGCGGGAAGAGCTTCTTCACGTCATCCGCGCTCAAGCAGCACAGGTTGGTGCACTCGGGCGAGCGGCGCTACCAGTGTAAGATCTGCGAGCGGAAGTTCACGCAGACCAGCCACCTCAACCGTCACTTCCGGCGCGAGCACAGCGCCCCCGGCGCACCACTTCCGGCGGCGCACTTGTACAAGGTGACTCTGCCGAGCGCCGGGGTGTCGACCATACTGGCCAAGCTCCCTGGCCTGACGTAG
Protein Sequence: MDCNDICRVCLQRNPLAFDIFTCFCWEKNIVYADMLSYCTKIVPSENDGLPRNICGDCSRHLKQAYSFIAQYIVNDKKLKDILTTSVIERNNCPIEKVVQSYENDCIKSELVSQASDSIIAIEKEEDDEFKSEITSDFECTDEFILPTDVKKEIEGSHTFFDRSKALSSKSNDKDDACNGNIDIEKFVADNSDNSNVIKGDDVNVERVKKKRGRKAKEVNKSVNGNIVCNNEPVSSLKAKTVSEASRNRVPQQCEECGKVLSSMSNLTTHKICHTNLRRYKCSECPAAFKGHSGLVQHRTLHTGEKPYHCEYCSKQFRRKPALINHIRMHMGEKLYSCKICSKRFVQSSQMFVHMKRHSGIKSYLCQECGKGFYIKADLQVHQRIHSGEKPYSCYLCSKTFATSGNLSIHIRIHNKEVRYKCKFCGRGFVTCSAFNVHVKRHKGQKDYQCECGKSFFTSSALKQHRLVHSGERRYQCKICERKFTQTSHLNRHFRREHSAPGAPLPAAHLYKVTLPSAGVSTILAKLPGLT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00875550; iTF_00874688;
90% Identity: iTF_00875550;
80% Identity: -