Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.5e-07 0.00015 22.6 0.0 1 38 18 55 18 59 0.90

2 3 8.8 8.5e+03 -2.3 0.0 5 12 67 74 64 78 0.83

3 3 4.3 4.1e+03 -1.3 0.1 30 45 130 145 130 145 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.5e-07	0.00015	22.6	0.0	1	38	18	55	18	59	0.90
2	3	8.8	8.5e+03	-2.3	0.0	5	12	67	74	64	78	0.83
3	3	4.3	4.1e+03	-1.3	0.1	30	45	130	145	130	145	0.79

Coding Sequence: ATGTCTTCGCGAAGACGAAGAGTTCTCGGGGCGAAACCCTACCGAAATTATAGTGAGGACACTTTGAAAGCTGCTATGGCAGCAGTTGACACTGGCATGACTTTGAGGGAAGcggaagaaaaatttaaaatacctcGAGCAACTTTAAATAGAAAACACCGAAGGCTACAATTAAACAAAGTCGGCCGTCCTAAAGTTTTCAGTGAAGCTCTGGAGGAAGTCTTTGTGCAATCAATCATTACAGCTGCCGCTTGGGGATATCCACTATCAGGTTTAGACCTATCTTTACTCGTGAAATCACATCTAGATAGGCTAGGTCTAAATGAGACACGTTTCAAAGGTAACTTACCGGGACGATATTGGCTGGAAGGTTTTCTACGGCGCCATAAAAGCACTTTATCTGTAAGGCTCTCAGAAAATATTAAACGCCAAAGAGCTGGAGTTACGCAGGAGACATTAAAATCATACTTCCAAGAATTAAAAACCACCTTGGAGGATGTAGATCCGACCGCAATAGTAAATTTTGACGAGACTAATATGTCTGATGACCCGGGACGCCAGAAGTGTTGGTACGTCGAGATATCAAGCATGCTCATAAAATCATTGACTCATCAAAATCAAGTACCTCCGTAA
Protein Sequence: MSSRRRRVLGAKPYRNYSEDTLKAAMAAVDTGMTLREAEEKFKIPRATLNRKHRRLQLNKVGRPKVFSEALEEVFVQSIITAAAWGYPLSGLDLSLLVKSHLDRLGLNETRFKGNLPGRYWLEGFLRRHKSTLSVRLSENIKRQRAGVTQETLKSYFQELKTTLEDVDPTAIVNFDETNMSDDPGRQKCWYVEISSMLIKSLTHQNQVPP*

Sequence clustering based on sequence similarity using MMseqs2