Lsin031432.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- cheC
- Assembly
- GCA_905404315.1
- Location
- FR990190.1:829629-830231[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.2e-09 7.9e-06 26.6 0.0 1 41 16 56 16 60 0.91
Sequence Information
- Coding Sequence
- ATGCCTCGTAACTATATAAGGAAATCGTTACGGGCAACTTGTTATACTCCTGAGGACTTGGCGATTGCAATACAGAGAGTGGGGAATAAAGAATTAACCATGTACGCAGCAGCTAAGTTATATAACATACCTGTCGCTACGCTGCACAATCGCTTACATAAAAAAACTGGAATAAAAAGCAGTACTCTAGGGCGTCCACCGGTTTTGCCTCTTGAAATAGAAACCCAATTGGCGAACGGACTTGCAGTGTTAGAAAAATGGGGATTTGGGTTATCAAGAAAGGAAGTGTTTTCACTTGTAAGGGAATTCGTTCATTTGAATGGGATATCAACACCATTTAATAGTGGAGTTCCAGGTCCAGATTGGTTTACAAACTTAAGAAAACGACATAGATTATCATTGAAAAAGGCTCAACCTATTGAGCATGTCAGACGAAAGAATACAGATCCGTTCATCGTGGGTGAATATTTTAGCCTATTGCAGGCTACTCTAAAGACGTTAGCTCTTGAACAAAGGCCAGAACTCATCTGGAACCTTGATGAGACTTCCGTTAGTTTGGATCCCTCTAAAACCAAAGTAGTTGGCCGAATGGCAGCGACATAA
- Protein Sequence
- MPRNYIRKSLRATCYTPEDLAIAIQRVGNKELTMYAAAKLYNIPVATLHNRLHKKTGIKSSTLGRPPVLPLEIETQLANGLAVLEKWGFGLSRKEVFSLVREFVHLNGISTPFNSGVPGPDWFTNLRKRHRLSLKKAQPIEHVRRKNTDPFIVGEYFSLLQATLKTLALEQRPELIWNLDETSVSLDPSKTKVVGRMAAT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00281133;
- 90% Identity
- iTF_00404773;
- 80% Identity
- -