Lsin002015.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- -
- Assembly
- GCA_905404315.1
- Location
- FR990154.1:7843653-7843967[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.8e-11 5.7e-08 33.5 0.1 4 43 18 58 15 60 0.89
Sequence Information
- Coding Sequence
- ATGGTGAAGAATTATAAAAGAAAGACGGAGAGAGGGAATTGGAATGAAAGAAGCATGAAAAATGCGGTAAATATGGTCATTGAAGGGAAAATGGGGTATAAGGTAGCATCAAAAAGATTTTCTGTGCCACAATCTACCCTAGAAAGAAAAGTAAAAGCAGCTCGTGAAGCCCTAAAACATCCTGCTGCTCCTGCATCGATTAAAGTACCTTTAGGCCCAACATACGAATATTTTCGGAAGAAGAAGAGAACGAACTTTGCAACTATATTTTGGATATGGAAAGTCGTCTCTATGGACTTACAACCAAAGATTTAA
- Protein Sequence
- MVKNYKRKTERGNWNERSMKNAVNMVIEGKMGYKVASKRFSVPQSTLERKVKAAREALKHPAAPASIKVPLGPTYEYFRKKKRTNFATIFWIWKVVSMDLQPKI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00875233; iTF_00451854;
- 90% Identity
- iTF_00875233;
- 80% Identity
- -