Lsin026838.2
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- -
- Assembly
- GCA_905404315.1
- Location
- FR990182.1:7724951-7725274[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.1e-13 4.9e-10 40.1 0.0 2 35 18 51 17 56 0.93
Sequence Information
- Coding Sequence
- aTGGCATCTACAAATTCTACAGCTAAAGGCAAGATCAGACAAACATGGGATAAAGATGCAATGGCAAATGCAATTAAAGCTATACGAGATAAGCAAATGGGTTTTTTGAAAGCATCAAAAACATACGGAGTACCCAAAACTACGCTTAAACGCTTATCAAAAATGGAAGACCAATCACTTAGCGACGTTACAAACCATAAACTTGGAAGAAAATCGACTTTGCCGAGTGAATTGGAAGCTGAATTATGTGATTATATTCTAGAAATGGAAAATCGGGATTTGGTCTTACACACAGGGACATCAGATCTATGGCTTACCAGCTAG
- Protein Sequence
- MASTNSTAKGKIRQTWDKDAMANAIKAIRDKQMGFLKASKTYGVPKTTLKRLSKMEDQSLSDVTNHKLGRKSTLPSELEAELCDYILEMENRDLVLHTGTSDLWLTS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -