Lsin035024.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- -
- Assembly
- GCA_905404315.1
- Location
- FR990197.1:2058101-2059707[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3 5.1e+03 -0.9 0.0 53 85 105 136 98 138 0.77 2 4 0.00017 0.69 11.5 0.1 49 86 194 230 165 231 0.86 3 4 0.028 1.1e+02 4.4 0.0 48 81 284 316 244 319 0.68 4 4 0.0066 27 6.4 0.1 49 85 385 420 361 422 0.86
Sequence Information
- Coding Sequence
- ATGGATTTAAACACACATCAAAATCAGAGTTACTGGTTTGTAGTTCGAGAAGACCAAAGCAATGTTATATTTAGCAGTAACAACTTTACTATTCAAAACCCACCGACCCAAGAAACAAGATTTATCGTCGATACTTCTGAAAATCGACAGTATCTTCAAGTGTGTGGCCTTCAGACAATTCCTGAAGAACCAAATAAAGATACTTGTGCGGCTGTAGAGTCAAAAGAAGATGTTAAGTTTTGGgacagaaataaaataaaaatacttcttAACTTATGCTTAGATAACAGGTATATGTCTGAAAACTCAACCATGATATGGGATGAGGTTGCACTGCTAGTGGGAACAACTCCAGAATTATGTGAACAAAAGTTTAGAAACCTCAGACGAACATATATTAGATTAATGAAGAAGAAACAAATGGGAAAAGAAATCAAATGGATACATTATAACTTATGTGAAAAAATCTTCAAAGACTTGGATACCACAGTTGAATCTATAGAACCTTGGGAAGATGCTAAGGTTAGGAGACTTTTGACACTTTACCtagaaaatatttgtaaatttagaGACACAAATTATTCACAAAAGGACACTTGGAGAGAGATTGCAGCTCAACTAAACACAAGTGAACATAATTGctatcacaaatttaaaaacttgaAAAGAACTTATTTTAACTGTTTAGAAAAAAGTCGAGATACTGGAAAGATAATAAAATGGAGATATCATAATTACTTTGAGAGAATATACTACAACTATACACCTGACATGGGGCCTTGGGACAAACACAAGATTCTACAACTTATAAAATCTTATGCTGAGATAGCCCATAAGTTCAGAGACCCAAAATACCAGAAAAAAGAATTGTGGAGAGAAATATCTAGAAAAGTTGGCGAGAGTCCCAGCCACTGCGACAGAAAATTTAGGAACTTGAAACAAACCTTTGTTAGATTGAAGATGAGAGAAGATGCCGGGAAATCAATAACTAAATGGAGGTATTATAAAGACTTTCTATCCATATATGAGAATAAATCATATTCTCTTCTAATTGATGACATTGATGTTGTTTATAAAAATCAGGAACAAGATTATATTATGCAGTTGCtcaatttttatattgaaaataaagataagtttaaTGATCCACTTGTTAAGAAAAAGAACCTCTGGAGAATAATAGGTGCAAAAGTTGGTTTGACTCCAGTAGAATGTGATAAAAAATTCAGAAACATGAAGCAAACTTATATGAGGCTGGTTAAGAAACAACAAACAGGTGACAAGCCTAACAGTTGGCCATATTATCCTTATTTCGAACAAATTTATGGGGAACATATACCTAAAAAAGAACACGCTCACATAAACAGCTGTAATATTGATATGAATGTTGAAGGTATCAGAAGTATTATACGTGAAGCTCATGAAATTAAAGAGCAAGATAAATTTAATAGGCTGGTAAAGGCCATAGAGGAATCTAACAACATACAAAGGGAAcggaataaaatattacaagctCTACTGGATAGATGA
- Protein Sequence
- MDLNTHQNQSYWFVVREDQSNVIFSSNNFTIQNPPTQETRFIVDTSENRQYLQVCGLQTIPEEPNKDTCAAVESKEDVKFWDRNKIKILLNLCLDNRYMSENSTMIWDEVALLVGTTPELCEQKFRNLRRTYIRLMKKKQMGKEIKWIHYNLCEKIFKDLDTTVESIEPWEDAKVRRLLTLYLENICKFRDTNYSQKDTWREIAAQLNTSEHNCYHKFKNLKRTYFNCLEKSRDTGKIIKWRYHNYFERIYYNYTPDMGPWDKHKILQLIKSYAEIAHKFRDPKYQKKELWREISRKVGESPSHCDRKFRNLKQTFVRLKMREDAGKSITKWRYYKDFLSIYENKSYSLLIDDIDVVYKNQEQDYIMQLLNFYIENKDKFNDPLVKKKNLWRIIGAKVGLTPVECDKKFRNMKQTYMRLVKKQQTGDKPNSWPYYPYFEQIYGEHIPKKEHAHINSCNIDMNVEGIRSIIREAHEIKEQDKFNRLVKAIEESNNIQRERNKILQALLDR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00874239;
- 90% Identity
- iTF_00874239;
- 80% Identity
- -