Lsin022388.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- Kdm5
- Assembly
- GCA_905404315.1
- Location
- FR990177.1:1046459-1048891[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-22 6.2e-19 69.3 0.1 3 89 94 176 92 176 0.93
Sequence Information
- Coding Sequence
- atgGATAGCAAAAATATACAGAAAAATGCTATGCAGAAAAGTGCTGAATTTACATTTACACCTCCACCAGAAGCTCCTGTTTTTCAGCCTACACTGGAAGAATTTGCGGATCCCTTGGGGTATATTGCTAAAATTCGTCCCGTGGCCGAAAAAACGGGTATTTGTAAGATAAAGCCACCATCCAGATGGCAGCCTCCCTTTTCGTTAGATGTCGACAAACTAAAATTTGTTCCACGAATACAAAAAGTGAATGAATTGGAAGCCATAACACGTCTGAAGCTtttatttcttgaaaaaatattgaaattttggGACTTACAAGGATCTCCACTGAAAATACCCATGCTCGAAAATAAAACATTGGATTTATACTGTCTTAAATTTTGGGTTGATGAAGAAGGTGGTTTCGAAGAATGTAATTCTCCAAAAAAATGGAGAAAAATAGCACATGCAATGGGATATGGCCAAAATACTAGCACAATTAATTTTCTTCGGAATAATTATGAAAAGGTTTTGCTACcatatgaaatatttgaaaaaagcaAGGCGGATATCTTGAAATCAGTTAAAAAATCTGAACCGAAACCAGAAATCTATGAAACAGAGATAGGCCAGCAGGTTATGAAAGAAATCTCTATTGAATCCATCACTAAAGTAAGAGAACACATTAAGGATGAAAAACCCAATACAAGcataaagaaaactaaaactGGATCAGATATAAAGCCTGACTTAGACCAAAGTAAAGATAGTGAGGCAATGAAATGCAACAGGGAATTAAGACGTCTTGCCTGTTATGGCCCTGGACCAAAAATGCCAGGATTAAATGATGAGGAATTTGATATAACTAAATCTAGAAAGAGACCAAGATATGATTTAGATCCATTAGCAATACATATTTGTGCAATTTGTCAGAAAGAACACAGGGATGACTTACTTCTGATATGCAATGGTTGCTCAGACACATACCATACCTTTTGCCTCAAACCACCTCTTAGTGCAGTACCTGATGGTGACTGGCGTTGCCCATGTTGTATTGCTCAAGAAGTACACAAGCCAGCTGAAGCATTTGGTTTTGCTCAAGCAGAAAGAGAATACACTTTACAACAGTTTGGTGAAATGGCAGATAAATTTAAGTCTGATTATTTTGGAATGTCGGGCCATTTGGTACCTACCCAAATAGCAGAAAAAGAATTTTGGCGCATTATTTCGTCAGTAGAAGAAGATGTCACCGTAGAATATGGCGCTGATCTACATTCCATGGACCATGGATCTGGCTTTCCTACAAAATCATCCATTAATCTGTTTCCTGGTGATCAAGAATATGTTGATTCTGGATGGAATTTGAATAATCTTCCAGTTTTGGATGGGTCTGTGCTAAGGTTCATAAATGCAGATATATCTGGAATGACTGTACCCTGGATGTATGTTGGAATGTGTTTCTCAGCATTTTGTTGGCATAATGAAGATCATTGGAGTTACTCTATCAATTACTTGCATTGGGGTGAAGCAAAGACTTGGTATGGAGTGCCTGGAAGTGGTGCAGAATTATTAGAAAAGGCCATGAAAGCAGCTGCCCCAGATTTGTTTAAATCACAACCAGATCTCCTTCATCAATTGGTAACAATAATGaatccaaatattttaatgGCAGCTGGTGTACCTATTTATAGAACTGATCAGAATGCTGGAGAATTTGTTGTTACATTTCCTCGTGCTTATCATGCTGGGTTTAATCAAGGATATAACTTTGCAGAAGCTGTTAATTTTGCTCCACCTGATTGGCTTAAAATTGGTAGAGAGTGTATTATGCATTATAAGAACCTCAAAAGATTCTGTGTATTTTCTCATGATGAACTTATATGTAAAATGGCTTTAGAGGGTGATCGCTTAGATCTAGAAACCGCTCTGGAAACACAAAAGGAACTTGTTCGTGCAACTGAAGAGGAAGGTCGTTTGAGGTCATTGGTCTCTAGAAAAGGTTTGAAAAATATAAGGAGAACAGCATTTGAATTATTAGGTGATGATGAAAGGCTTTGTGAGGTTTGCAAAACTACTTGTTTTTTATCTTCTGTCTCCTGTCTAGAATGTAAACACATGGCATGTCTACAACATGCtgattcaaaagaattttgTGATTGTATATTAGGAAAGAAAGTATTATATTATCGTTATGATATGAACGAACTTCACATAATGCTGCAAACAATTGATTTCAGAGTAAATAGTTTTGATAAATGGATGACTGAATCTAAAAAAATACTCTTGCCAACAGCCCCAGATATTGGGAGACTGCAGAAGTTAAAACTTTTGGTGGATGAGGCAGAAGAATTGAAAATTCCCAAGTGTACATTACTGACACAATTGAAAAATGAATATTCTAAAGCCACATCAAACATTGAGTCCATTGTAATTGAGTTAGATGATGATTAG
- Protein Sequence
- MDSKNIQKNAMQKSAEFTFTPPPEAPVFQPTLEEFADPLGYIAKIRPVAEKTGICKIKPPSRWQPPFSLDVDKLKFVPRIQKVNELEAITRLKLLFLEKILKFWDLQGSPLKIPMLENKTLDLYCLKFWVDEEGGFEECNSPKKWRKIAHAMGYGQNTSTINFLRNNYEKVLLPYEIFEKSKADILKSVKKSEPKPEIYETEIGQQVMKEISIESITKVREHIKDEKPNTSIKKTKTGSDIKPDLDQSKDSEAMKCNRELRRLACYGPGPKMPGLNDEEFDITKSRKRPRYDLDPLAIHICAICQKEHRDDLLLICNGCSDTYHTFCLKPPLSAVPDGDWRCPCCIAQEVHKPAEAFGFAQAEREYTLQQFGEMADKFKSDYFGMSGHLVPTQIAEKEFWRIISSVEEDVTVEYGADLHSMDHGSGFPTKSSINLFPGDQEYVDSGWNLNNLPVLDGSVLRFINADISGMTVPWMYVGMCFSAFCWHNEDHWSYSINYLHWGEAKTWYGVPGSGAELLEKAMKAAAPDLFKSQPDLLHQLVTIMNPNILMAAGVPIYRTDQNAGEFVVTFPRAYHAGFNQGYNFAEAVNFAPPDWLKIGRECIMHYKNLKRFCVFSHDELICKMALEGDRLDLETALETQKELVRATEEEGRLRSLVSRKGLKNIRRTAFELLGDDERLCEVCKTTCFLSSVSCLECKHMACLQHADSKEFCDCILGKKVLYYRYDMNELHIMLQTIDFRVNSFDKWMTESKKILLPTAPDIGRLQKLKLLVDEAEELKIPKCTLLTQLKNEYSKATSNIESIVIELDDD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01487498;
- 90% Identity
- iTF_00875085; iTF_00874233;
- 80% Identity
- iTF_00875085;