Lrea001149.1
Basic Information
- Insect
- Leptidea reali
- Gene Symbol
- -
- Assembly
- GCA_949711725.1
- Location
- CATIXN010000001.1:23684249-23699299[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.73 91 4.9 0.0 3 23 112 132 110 132 0.96 2 13 0.31 39 6.1 0.1 2 23 136 158 135 158 0.94 3 13 9.4 1.2e+03 1.4 4.2 3 23 163 184 161 184 0.91 4 13 0.094 12 7.7 0.0 2 23 380 402 380 402 0.96 5 13 0.0082 1 11.0 0.1 1 21 410 430 410 431 0.95 6 13 0.02 2.5 9.8 0.8 2 23 441 462 440 462 0.94 7 13 1.8 2.2e+02 3.7 1.2 1 23 510 533 510 533 0.90 8 13 0.38 47 5.8 1.6 2 23 609 631 609 631 0.88 9 13 2.9e-05 0.0036 18.8 2.4 1 23 666 688 666 688 0.97 10 13 4.4e-07 5.4e-05 24.5 1.5 1 23 695 717 695 717 0.98 11 13 7.2e-05 0.009 17.5 2.3 1 23 722 744 722 744 0.96 12 13 4.3e-05 0.0054 18.2 3.0 1 23 750 772 750 772 0.99 13 13 8.6e-05 0.011 17.3 1.1 1 23 778 800 778 800 0.93
Sequence Information
- Coding Sequence
- ATGACGTTTGATGAATCCGATGATGAGCCGCTATCTTCCTTAGCGGAAGCAAAGAGAGCGAACCCCAAATTATATGTTCAAAAGAAAAAGAAGACTAAGAAGATACTAtcgaaaaaattaataattcctaCGTTGAAACCACAGCTTACTATTACATTGAAAAGTGTTCCAAAACCTTTAGTTCAAACAGTGGTGAAACGACCAGGCGATGTATGGTTGtatttaaaggatttaaatggTTCTGGCCCTTACAGTTGCTTGTTATGTCCAGATTGGTTTACTAATAgaccaaaaataattattcattacgttttaaatcataaaaaggACTTTTGTGGGATTTGCAGGTATTTTGTACCTGACAGAGATGCATGGATTGATCATATTAAGTTCCACACTCCCTGGCCCTGTTCACAATGTGTAGAAACATTCCCAACAGAGGAGCTATCAAGAAATCATTTAAGAAATGTACATAACCTTGTGCACTGCCGTCTGTGTCACTTCAGATTATCAACCAGTGAAAATTATGACAGCCACCTTTACCAAAAACACAATGTAACTAATGTTGCATGCATatatggagatctttgggataCAAGTGTCTACAATAAGTTTCTATGCCTTCTATGCATGAAGCCAGATAATAAATATCTCAACTACACTTGTAAAGACCCACCATTTACTGTAAAAGGTGTTGATGTAAGCCTTCAATTTATTGAAACAGAATTGAAAGGACAAACGAAATGGGGCTATGTTGATATTGATAACCCAGTGATAAATGCACCAGACAATAATTTTGCAGACTATGTCCTCGGTAGCCAGCAAAACCAGGCAACTGTAGAGGTAAAACAGGAAGTTTTAAGTGATAGTGAAGAAGGAAAATTAGATGGTGAAACTAATGCAATAAATGCTGCGGCTAAGTCTGATAATGAGGATGTTAACCAGAATGATAGAGTGAATGATGAAAGAATTGATTACGCCGGCATTGAAGACTTTGATATTACTTTAACAGAAATCATTCTGCTTGAAGTGTGCTTCTATGACTACATTGATCAAACATTGAATAATCTAAATAATGAAGTTATTCCAGATCACTCTTTCATTAATTACCAAATGCTACAGACAAATTTTGCCGAAGTATGTTCATTATGTCCAGCAAGGTTTGAGGATGGTCCATCATTTGCAATACATATGAATAAAGCACATTCCGTGAAGCTACTTTCGTCATTTTCATGCAGAGTTTGTTCAACAAATTTTGACTCTCCAAATGAATTAGTAAATCATATAAATGAAGAGTTAGGTGACTTTGAAGACCTATGGATATGTCAGTTTTGCGATAAAGAATTTGATAATAGAGAGAAAACTCGGAACCATCTTACTGAGCATTGGAATGACTTGGAACTTGGAAACTGTTTTAGTCCACATTTGGGATTCAAATGTAAATTCTGTCCAATGCTGTTTTGGAATGAACCTGATAGAGAATTACATCAGTTAGATTTACATTTTCCTGTATTCAAAGACCAGTTTTATAGATGTATAGAATGTGAACAAACATTTGGAGATAAGATTTGGTTTGTGCATCACTTTATACAGAAGCACAATCAAATATCAACACCATATCTCCTCAAATGCTGCATATGTTGCAATGTGCTCACAAACATGGACGACATGCGAAAACATTTCTCAGAGCACCATCCGGAAGCCAGAAAGTTATTCTGTTCACTTGAAACTTGTGTGTACAAGCCGTTGAGTAGCCGGAAATCTTTTAAGATACATCTTAAGGCCATACATGGCCCCACCGCTCGGAAGGGTGGCATACCAGAGAAGTGCTATCTATGTGGCCGAATGTTTGCGACAGCTAGAGCTTGCAGCACTCATATTACCCAACAGCATGGCACTACAGGCAAATTGAAGTGCAAACTGTGTAATGAATTATTACAGACTATGGATGAACGTAAGCTCCATTACCTCCTGCGACACCCCGGCCGGCATCCGTTCGAGTGCACTGAATGCGGAAAGTCGTTCCAGTACAAGTCCTCCCTCTACATGCACAAGCAGAACCACCAGCCCAACAAACAAGGCTTCACCTGCAGCTACTGCGGGAAAGTGTTCACGAAAAAAGACTCATACCGCGAGCATATCCAGATCCACGAAGGGCCGCGCCATGCATGCTCGTACTGCCCCATGCGGTTCGTGCAGCGCTCCAACATGCTGCGACACGAGCGCCGCCACACGGGCGAACGGCCTTATCAGTGTCCGCACTGCGAGAAGACCTTCGCGGACAAGGGAGCGTGTACAGCGCACACTAGAACCCACTCGAGGGACACGTCGTTCGCGTGTATTTACTGCGGTCAAACGTTCGTGCAGAAATCAAAACTCTCTTACCATATACGAAAGCATACTGGGGAAAAAGCATGCTTAAAAGAATTTAGGAATCTAGAACATAAATCCAAATCGAGCATTAATAAACAATCGATGTCGTTTGCAAAGGTTGCAGCACAAAATCAAATGAAGGTGGATGCAAAACCATGTGTGGCCACAAAAAATGCGGTATCAACAAATATTGGTTTACTTTCAAAGACCAGTAGTAAGAATAAATCACTGATGGAACTCGATAAAAATACTGTAGTTGAAGAGCGGGGAACTAACTACATTATCAGACAAGTCGCTGAGGAACCGCAAATAAGAACTAATGAAATAATAGAGGATAATGTATGGACAGAAGTTCGTTCGAGAAAAAGTAGGTATCCAAATAAGGAGATAAAAAAGGAGGAATGA
- Protein Sequence
- MTFDESDDEPLSSLAEAKRANPKLYVQKKKKTKKILSKKLIIPTLKPQLTITLKSVPKPLVQTVVKRPGDVWLYLKDLNGSGPYSCLLCPDWFTNRPKIIIHYVLNHKKDFCGICRYFVPDRDAWIDHIKFHTPWPCSQCVETFPTEELSRNHLRNVHNLVHCRLCHFRLSTSENYDSHLYQKHNVTNVACIYGDLWDTSVYNKFLCLLCMKPDNKYLNYTCKDPPFTVKGVDVSLQFIETELKGQTKWGYVDIDNPVINAPDNNFADYVLGSQQNQATVEVKQEVLSDSEEGKLDGETNAINAAAKSDNEDVNQNDRVNDERIDYAGIEDFDITLTEIILLEVCFYDYIDQTLNNLNNEVIPDHSFINYQMLQTNFAEVCSLCPARFEDGPSFAIHMNKAHSVKLLSSFSCRVCSTNFDSPNELVNHINEELGDFEDLWICQFCDKEFDNREKTRNHLTEHWNDLELGNCFSPHLGFKCKFCPMLFWNEPDRELHQLDLHFPVFKDQFYRCIECEQTFGDKIWFVHHFIQKHNQISTPYLLKCCICCNVLTNMDDMRKHFSEHHPEARKLFCSLETCVYKPLSSRKSFKIHLKAIHGPTARKGGIPEKCYLCGRMFATARACSTHITQQHGTTGKLKCKLCNELLQTMDERKLHYLLRHPGRHPFECTECGKSFQYKSSLYMHKQNHQPNKQGFTCSYCGKVFTKKDSYREHIQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYQCPHCEKTFADKGACTAHTRTHSRDTSFACIYCGQTFVQKSKLSYHIRKHTGEKACLKEFRNLEHKSKSSINKQSMSFAKVAAQNQMKVDAKPCVATKNAVSTNIGLLSKTSSKNKSLMELDKNTVVEERGTNYIIRQVAEEPQIRTNEIIEDNVWTEVRSRKSRYPNKEIKKEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00875581;
- 90% Identity
- iTF_00875581; iTF_00876458;
- 80% Identity
- -