Lrea013678.1
Basic Information
- Insect
- Leptidea reali
- Gene Symbol
- -
- Assembly
- GCA_949711725.1
- Location
- CATIXN010000010.1:20182907-20191892[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0055 0.69 11.6 0.8 1 23 137 160 137 160 0.97 2 10 0.0017 0.21 13.2 0.8 1 23 167 189 167 189 0.96 3 10 0.00095 0.12 14.0 0.4 2 23 225 247 224 247 0.94 4 10 1e-05 0.0013 20.2 0.4 2 23 250 272 249 272 0.96 5 10 0.017 2.1 10.1 2.3 1 23 278 300 278 300 0.97 6 10 3.9 4.9e+02 2.6 2.1 2 21 310 329 309 334 0.91 7 10 0.00025 0.032 15.8 4.8 1 23 339 362 339 362 0.91 8 10 9.7e-05 0.012 17.1 0.8 1 23 368 391 368 391 0.98 9 10 2.2e-05 0.0027 19.1 2.7 1 23 399 421 399 421 0.97 10 10 0.0024 0.3 12.7 4.0 1 19 427 445 427 450 0.94
Sequence Information
- Coding Sequence
- ATGTTATGCTGGGAATGCAGAGcaatacttttaaaattctATAAGTTTAAAATTCAAGTGTTAAGGATTCAAGAATTACTAGAGAAGGTGCCGGTCATCAAATCTCATAGTGCACTATCAAAGAAGACTGTAAATTACTTTGATTATGAACTTACATATAATTCTGAAGTTGATAATGAAAAATTGGAAAGAGTTGAAGACGATATTGTAGATAATTTTGATGATGACATCAGtaatgaaaatgataattgtgGTATGACACAGGATTTCTTAAGCAAGACCGATTTTCAAGCTTCGAAGCCTTTGGAAGGTGAGCTATGTAAGTTCAGAGTTGTCAGGTTGAGTAAAGACGAGTTGATGAGTAAGAGAGAGGAGAAGAGGAGACAGCCTAACTTTAAGAAGATTCCCTTTAAGTGTGATGGCTGTGTTTTGGGATTTACAAAGAGAGAGAATTATGACGAGCACTGGAAGAAGAAACACTGTGAAAGCATCGGCAATTTTGCGTGTAGAATATGTCAAATCCGGTTTCGACATGAGGCAGAGCTAGATAAACACGAGATTCGACATTATGTTTGCTACAGATGCGCGCTGTGTAAGTTCGAATGTGGATTGGAAAGGACCGCCATCTTGCATTGTAGAATCAAACATGGCGGCGATCACATAGGAAGTGTTCGTTGTACGCAATGTGATGATGTATTCagATCATCGGAAGAATTGCAAGAACATAGAAATGAGAAGCATTTTGTAACCTGTGATGATTGCGGTAAAAGATTTAAGGGGAAACGTACACTCAGTAGCCACATCATTCGCATACACAACAGGAAGAGTACACATACATGTGACATCTGTAAGAGATGGTTCTCGAGCCAACGTCGCCTGGAGTCGCACGTAACGTCACACAGTGCCGAGATCGCACGAAAACTTTCGTACTGCGATTCGTGCGAGGTTCAATTTAAGAATATCCACGTGTACCGGCACCATTTGAAAAATACCGCTCAACACGCCAAGGAAACatACGAATGCGGAGTTTGCCACAAGCGGTTCTCCTCGAAGGGCTATTACAAGAAACATTATGACTTTTATCATCTACGAAAATCCAATTATAAATGCGATATTTGTGACAAGCTATTTGTGTCCGATTGGCGTTTGAAGCAACACCAAATGACTCGGCACGGACTGGCTCGAACCAGGGACCATAGATGTGATGTTTGTCAGAAAATGTTCTATtcgTCATCGACTCTGCGAGACCATTACTTGATTCACTCGTCACTGCGAAGGTATATGTGCTCTCACTGCGGAGTCACCTTTAAACAGCGCGCCGCTCTACACACGCACTGTACGCTACTCCATAAAAATACAAGTGTTCAATAA
- Protein Sequence
- MLCWECRAILLKFYKFKIQVLRIQELLEKVPVIKSHSALSKKTVNYFDYELTYNSEVDNEKLERVEDDIVDNFDDDISNENDNCGMTQDFLSKTDFQASKPLEGELCKFRVVRLSKDELMSKREEKRRQPNFKKIPFKCDGCVLGFTKRENYDEHWKKKHCESIGNFACRICQIRFRHEAELDKHEIRHYVCYRCALCKFECGLERTAILHCRIKHGGDHIGSVRCTQCDDVFRSSEELQEHRNEKHFVTCDDCGKRFKGKRTLSSHIIRIHNRKSTHTCDICKRWFSSQRRLESHVTSHSAEIARKLSYCDSCEVQFKNIHVYRHHLKNTAQHAKETYECGVCHKRFSSKGYYKKHYDFYHLRKSNYKCDICDKLFVSDWRLKQHQMTRHGLARTRDHRCDVCQKMFYSSSTLRDHYLIHSSLRRYMCSHCGVTFKQRAALHTHCTLLHKNTSVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00874802;
- 90% Identity
- iTF_00874802;
- 80% Identity
- -