Lrea008695.1
Basic Information
- Insect
- Leptidea reali
- Gene Symbol
- -
- Assembly
- GCA_949711725.1
- Location
- CATIXN010000006.1:21731695-21752109[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.9e-05 0.0086 17.6 0.7 1 23 167 190 167 190 0.97 2 11 0.042 5.3 8.8 0.7 1 23 290 313 290 313 0.95 3 11 0.0029 0.37 12.4 0.6 1 23 319 341 319 341 0.98 4 11 0.002 0.25 13.0 1.3 1 23 377 399 377 399 0.96 5 11 0.0044 0.55 11.9 0.6 3 22 411 430 410 433 0.88 6 11 0.00031 0.039 15.5 0.4 1 23 461 483 461 483 0.98 7 11 0.029 3.6 9.3 0.4 3 22 493 512 491 516 0.88 8 11 8.2e-06 0.001 20.5 0.7 1 22 524 545 524 547 0.89 9 11 0.011 1.4 10.7 2.0 2 23 554 576 554 576 0.95 10 11 0.00027 0.033 15.7 3.3 1 23 581 604 581 604 0.94 11 11 0.037 4.6 9.0 1.5 1 23 610 634 610 634 0.94
Sequence Information
- Coding Sequence
- atgactaaaatCAACAATTATTGCTGTGGCTGTTTGGACGCCGGTAGCGATTTGTCCCTTGTAAACAACGCACAATTGAAGAAATGTTTTTATCTTATATGCAACGAAAAAGAGGATTCTAAAGCAGatgtattacaaatattattatgttattactgTATAGGGCTACTTGAAAAGATTAAAAGATTTCAAGAAAAAGTACAAACTACACAGAGGTTGCTAAAGGAAACAGATAACAACTTAAATGCTGATCAAAAAAAGCCATTACAAATTActgaaatatataacatatcatTGGAAGACAAATGTAAAGTCCAGGATGAAGtacctaaaataaaatctgAACTAATTAACAACTCTAGTAATAACAATGGAAGTCACACACCGGAAAAGATAACAAATAATGATTCAATAACAAATATTGTTGATGAAggtagtttgaaaaaaaaagtggaAACTGAAGATGTTATTGTTAGTCCAAATTCTGTGTTCTCCAGATTCAAGTGTGAAATATGTAATGTTGGATTTATACAAAAGGATCATTTAGAtgtacacacaaataaaattcatgATCTATCGTCAAACTCTCACAAACGAAACACACTACAAATCTCAGAAGTATTCAATATATCGTTAACAGGCAACTGTAATATACTATATGAAGTTATACCACAAATAAAATCTGAACCCAATGATGCTGGCTCCGTTTGTTCCAACGACGAATCTGACTACAAACCCGACAAGGTGGAACTTGAAGAGTGTGATGAAGACAAAGTTGAATTGTTCCGGAAGGTTAAGTTAAAACCAGCGGATATTGAAGCTGAAAGGAGAAGGATTATGAACAGTGATGATTATGTGTATGCTATGTTTAAATGTGATAAATGTATTGTTCCGTTTTCAAGTAAAGATGATCTGGATGAGCATtttaaacttaaacataaaattGATTCCAAATACAATTGTGTTATATGCGAACGCGGGTTTAGTAGGGACTTGGCATACAGATATCATATGAATCGACACAGACTGCGGTTCCAGTGTGTTATGTGTGAAGTCCTGTTGGGAACCAAGAGGGAAGTGATGTTGCATTCCAGAGAACATGGCAACAAGTTGACCGAGTCACCCATGTTCCCCTGCCCCAAGTGCAGCAAGCTGTTCAGGTGGAAGACCTCGCTGCGGAAACACCTGGAGCAGCATCAGATCGAAGATGGTGAGAGACGGAAGCCCTACTGCGAGGCTTGTGGATTGTACTTCACGTCGGCGAGAAGCCTCAAGAAACACCAGGACAGTTCAAAACATAAGATACAACTAAAGTTACTTcaCACAGACAGTGATGACATAAAAATGATAAGCACGGTCGTGAATGAGACTCAGAAGACATACCCGTGCACCCTGTGTGACAAGAAATTCCAGTGGAAAGGAAACCTGGTGAGGCACGTGCAAAGCCACAAGGCAAAATTGAACGGTGACCTGGTGTGTGCACCATGTAACAGGACCTTCTCGTCCATAGCGACTTATCAGCAACACATGAAGAGTAGTCTCAAGCATGTCTCTCAGAATGATCTGAAGTTTGTGTGCACCGACTGCGGCAAGCGATTCGCCAGTAACAGTAAACTGCGCGATCATTCGGACTATGAACATCGCAAGATATACTCAAACACGTGTACCGTTTGTGACAAGGTGTTCAAGTGTCGTGCATCTCTATTCCTTCACAAACAAGTGGTGCACCAGAAGAAGGAGTTCCTTTGTGACCACTGCGGGAAATATTTCCCTAACAAAACGAAACTGGGTCATCACATAAGGGCGACACACACGCGCGACGGTTCGTACGTGTGCGGCACCTGCGATGCCAAGTTCGCGTGGGCCTCCTGTCTGTCGAGACATAAGAGGACACAGAAACATGCGTGA
- Protein Sequence
- MTKINNYCCGCLDAGSDLSLVNNAQLKKCFYLICNEKEDSKADVLQILLCYYCIGLLEKIKRFQEKVQTTQRLLKETDNNLNADQKKPLQITEIYNISLEDKCKVQDEVPKIKSELINNSSNNNGSHTPEKITNNDSITNIVDEGSLKKKVETEDVIVSPNSVFSRFKCEICNVGFIQKDHLDVHTNKIHDLSSNSHKRNTLQISEVFNISLTGNCNILYEVIPQIKSEPNDAGSVCSNDESDYKPDKVELEECDEDKVELFRKVKLKPADIEAERRRIMNSDDYVYAMFKCDKCIVPFSSKDDLDEHFKLKHKIDSKYNCVICERGFSRDLAYRYHMNRHRLRFQCVMCEVLLGTKREVMLHSREHGNKLTESPMFPCPKCSKLFRWKTSLRKHLEQHQIEDGERRKPYCEACGLYFTSARSLKKHQDSSKHKIQLKLLHTDSDDIKMISTVVNETQKTYPCTLCDKKFQWKGNLVRHVQSHKAKLNGDLVCAPCNRTFSSIATYQQHMKSSLKHVSQNDLKFVCTDCGKRFASNSKLRDHSDYEHRKIYSNTCTVCDKVFKCRASLFLHKQVVHQKKEFLCDHCGKYFPNKTKLGHHIRATHTRDGSYVCGTCDAKFAWASCLSRHKRTQKHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -