Lrea013697.1
Basic Information
- Insect
- Leptidea reali
- Gene Symbol
- -
- Assembly
- GCA_949711725.1
- Location
- CATIXN010000010.1:20370335-20395498[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.9 9.9e+02 1.7 0.2 1 23 184 207 184 207 0.83 2 11 3.6 4.5e+02 2.7 0.1 9 23 221 235 215 235 0.78 3 11 0.23 28 6.5 1.5 1 23 239 261 239 261 0.88 4 11 0.0027 0.34 12.5 1.7 1 23 312 335 312 335 0.96 5 11 5.1e-05 0.0064 18.0 3.2 2 23 340 361 339 361 0.97 6 11 0.0043 0.53 11.9 0.2 2 23 369 389 368 389 0.97 7 11 4.6e-05 0.0057 18.1 0.9 1 21 395 415 395 420 0.94 8 11 0.00073 0.092 14.3 0.3 1 23 428 451 428 451 0.94 9 11 0.00018 0.022 16.3 0.1 1 23 457 480 457 480 0.97 10 11 2.4e-05 0.003 19.0 0.5 1 23 490 512 490 512 0.94 11 11 9.9e-05 0.012 17.1 1.4 2 23 519 541 518 541 0.95
Sequence Information
- Coding Sequence
- ATGTTTCATCTTCTGCGGTATGGACTCTGTCGAAAATTCATTCTTAATAGAAGTCTAGACCATACCTACATGTCCCAATCTCTGTCGTCACTCGAATGCGTCGTAAAACGAAACTACGACAGGGTGTTTGTAGACACAAATGAACAAGTAGAATGGACGTCACACTATATAGCTATAACCCCGCAGGATGTTAAGAACGAAAGCTTTGATGTGAGCACTATACAGGAGGCTGTTAGCTACATGGACGATCAAATTATTGGAGtccCCGAATTGGTGTTAAAGAATCCATTGACCGGTGTTATGTCGCACATAGTTGTCGGTACGGATCCAATAGTGTCGTCTTCTCAGAATATTAAAGCGGAATCTAATGACTACATAATTAGcaCAATCTCATACAAGGAGCCAGAGAAGCCTGTTCAAGTTCAAAAGCAGCCGACAGATGATTTCATGGACTTGAAATGTGGATATAGTATGGAATATATGTCAGAAGAGAATATGCTGGCTTGTAGacaaGAGCTAAAACAACAAGTACAATACGCCAGCGCGGtttataaatgtgaattatGTATTATCGGATTTTATATGCAACAGCAGGTAGAGGAACACTTCGACAGCGCTCACAAGGAGagaCCGAACACAGAAGCATGTAAGATCTGCTATGTGTATATAGATGTAGGTTCCTTGGAGTCTCACACGAGGTCACACTACACTCGATACACCTGCAAGATATGTCCCAAGAGCGAGATGAGCCTGCAGTTGATAAAACACCACGTAAAATCGCACCTGGTGAAACCGCTGCCAAATAATGTGTTCAATATTGAAGAGGCTGTGATGAAGAAGaccaagaaaagaaagaaagatagCAATGAAGATGGAGGAACATCGAAGTCTGGCAACTTGAGGAAGCTTCTCTCGAAGACGACAATAACTGGTTACAAGTGTTTGGAATGTGATATGTTCTTTAAGAATTCCCGTGCCCGAAAAAACCATGTCGCCAGATTCCACAGAGAAGGTTTGCAGTGTGACCATTGTAAGAAGAGATTTGTTAACAGGACTACACTGGCAACACATCTTAAATTACACGAAGGGCCACCCCCGCGCAAGGAATGCCCCATCTGCGGTAAGATGGTGCGCGTGATTCAGCTGAAGTACCACATTCAGCGGCACCAGACGAGTACCAAATACGAGTGTGAGGACTGCAGCAAGGTGTTCTCTCACCTGGCGACCTACCAGGCACACCTCAAGTACTCCAGGGCGCATGCTACCGAGATGGTGCTCAAATTTCCTTGCCCAATGTGCAACAAGGGGTATCCGACAAAAGAAGCGATGCAGGACCATTTCAATTATCAACACCTGGGAAAGACAACTCACAAATGTCCGATATGTGAGAAGCCAATTGCGTCGAAAGCTAACATCGAGAAGCACATAATGCGAGTCCACAAAGAGAAAAAGGAGAAACCGAAGAACCACGTGTGCAGATTGTGTGGAAAAGCATTTTCGgaTAAAAAAGCGCTGAATCAACACGAGGTGATCCACTCGTGCGAGCGCCCTCTATCGTGCGATATTTGCTCGCAGACCTTCAAACAGAAGGCGTCGTTGTACACGCACAAGAAACGAGTTCACAAACACGTGACGCCAAAACGTGTCGTCGAATTTATGGAGAAATAG
- Protein Sequence
- MFHLLRYGLCRKFILNRSLDHTYMSQSLSSLECVVKRNYDRVFVDTNEQVEWTSHYIAITPQDVKNESFDVSTIQEAVSYMDDQIIGVPELVLKNPLTGVMSHIVVGTDPIVSSSQNIKAESNDYIISTISYKEPEKPVQVQKQPTDDFMDLKCGYSMEYMSEENMLACRQELKQQVQYASAVYKCELCIIGFYMQQQVEEHFDSAHKERPNTEACKICYVYIDVGSLESHTRSHYTRYTCKICPKSEMSLQLIKHHVKSHLVKPLPNNVFNIEEAVMKKTKKRKKDSNEDGGTSKSGNLRKLLSKTTITGYKCLECDMFFKNSRARKNHVARFHREGLQCDHCKKRFVNRTTLATHLKLHEGPPPRKECPICGKMVRVIQLKYHIQRHQTSTKYECEDCSKVFSHLATYQAHLKYSRAHATEMVLKFPCPMCNKGYPTKEAMQDHFNYQHLGKTTHKCPICEKPIASKANIEKHIMRVHKEKKEKPKNHVCRLCGKAFSDKKALNQHEVIHSCERPLSCDICSQTFKQKASLYTHKKRVHKHVTPKRVVEFMEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00876530;
- 90% Identity
- iTF_00876530;
- 80% Identity
- -