Lrea003639.1
Basic Information
- Insect
- Leptidea reali
- Gene Symbol
- L
- Assembly
- GCA_949711725.1
- Location
- CATIXN010000003.1:2475396-2515400[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9.6e-07 0.00012 23.4 1.7 1 23 89 111 89 111 0.99 2 11 0.41 51 5.7 5.8 1 23 117 139 117 139 0.97 3 11 3.7e-06 0.00046 21.6 5.1 1 23 145 167 145 167 0.99 4 11 1.7e-05 0.0021 19.5 0.1 1 23 173 195 173 195 0.98 5 11 9.6e-06 0.0012 20.3 0.7 1 23 210 233 210 233 0.95 6 11 0.00011 0.014 16.9 0.1 2 23 322 343 321 343 0.96 7 11 0.33 42 6.0 0.0 1 23 351 373 351 373 0.95 8 11 2.9 3.6e+02 3.0 0.7 2 23 381 402 380 403 0.91 9 11 0.34 42 6.0 0.4 3 23 479 499 478 499 0.95 10 11 0.0036 0.45 12.2 0.1 1 20 507 526 507 529 0.95 11 11 0.028 3.5 9.4 0.2 1 23 536 558 536 558 0.96
Sequence Information
- Coding Sequence
- ATGATCATGTTATTCAAAGGGAATAGCAGTAGACTAGAGCATTTGATTGAGAAAATTCAGGCTAATAAAGAGAATCACGAGGTATCGTCGGAGGAAATTAAAGaAGCGCTGGGAAGTGTGGGGAGCACAGCAGGGAGCTCCTGGCCATCATCAACTCCGGAGCCGTCCCCATCACCAGCCTCCACACCCACCTCAGCTGACGCCGTGGAAGCTGAACCCGACGGCGAGCCACCTTTCACCTTTGGGACCACAGAGCATACACCATACCAATGCCAGTTCTGCGACAAGGCTTTCCCTCGCCTGTCATATCTGAAGAAACATGAACAGACTCATTCGGATCAAATGCCATTTCGTTGCGAGTTTTGTTCGAGACTGTTCAAGCACAAGAGGTCACGTGACCGGCACGTGAAGCTGCACACTGGCGACAGGAAGTACCGGTGTTCCCATTGTGAATCAGCTTTCTCGAGGAgCGACCACTTAAAGATTCACATGAAAACCCACGACAACCAGAAGCCGTTCCAGTGTACCGTCTGCAACCGAGGATATAACACGGCAGCCGCGCTCACTTCTCACATGCAGGGACACAAGAGGGACCGGACCGCGAGAGACATGGACAAGAGAAGGGGATTCAAGTGTGGTCGATGCGGAGAGAACTTTCGTCGACATGACTTACTGCAGGCACACATGTCTGCTGTGCACGGCATTGAGACATTAAATCCGTTGACACCACCGAGACGCGTGGCTTCACAGCCGCTGCCCACGTTACTTGCATGCATCTACTGCACACGAGACACATTCACGAGCATGGAACAGTTGCAACTGCACGAGTTTAACGGCGATGTAACGAGAAACAAAAGAATAAACAACAACAACGGAGAAGAAACTCCTTGTGATTTGCCCGGTGATAATGGTCCTATACCTCCTCCAGAAGATCGTCGTCGGAAGAACGGTGCAGTTGCTTTACAGTGCGCATATTGTGGCGAACGTACGAGGAGTAGGGCGGACCTGGAAGCGCACACCAGGGCTCACTCCGGCAACACTGTGGCGCGACATAAGTGTCTCATTTGTGACGAAGTGCTGCCCTCTGCCGCGATCTTAGCTGAACATAAACTTACTCATTGCAAGgtGGTTGCGGGGGACACCTGTGCTCGCTGTCGCTCAAGGCTGCCTTCAGAAGATGCGTTCCTAACTCACATGGCTCGTCACCATCCAACATTACCAGCACCTTGCATAATTTGCCGGCAAACTTTAGCTTCTGAAGCCGAAGCGCGCCTTCACGCTCGGTTCCATTTACGACCCAGCGAAGACGAACAAAGATGTGCTATTTGCTTAACAACGCTCACTGAGAGTGAGTGTGGAGGTGGGGTGCGTGCTTGCTCGTCGTGTTACGCTCGACATTCAACTCCTCGGCCCCCTCCACCGACAGACAGTGACTGTCGCCTCTGTAGAAGATCACTCGAGTCTCCCACACGTCTCCAAACTCACCTTATCGAACACACTTTCGCTGGAATAGGTTCCTTCAGCTGTTACTTATGCTCAGCTGTATTCACAAGCGCAGCGGGGCTACAAAGACACTTACCGGAACACCCCACTGCTTCTAGGCCATACGATTGTGGTCGATGTGGTTTGAAATTCTTTTTCCGAGCGGAATTGGATAACCACGCGTTGATTCACTTAGAAGAAGCAGAATTGGCCCAGAGGGCGTTTTATGAAGCGTATGCTAGAGGTGCTGTGACCGCTTGGGCAGCTATGCAATCTGAAACTTCCCCTAAGCCGCTGCCACCGGGCCCTTCGACAACGACAGAGTTGAAAGTAAAGCAAGAGAATGAAATTAAGGAGGAGAAAAATGATGAATACATTGAAGTATCATCGCCACCTCCACCGCCAGTAGACCCTGAGCCCTCAGATCCAACAAAGGTTGTGGTAAAACAAGAAAAACCTGAAGAGGATAACTAA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHEVSSEEIKEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAVEAEPDGEPPFTFGTTEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCSHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRTARDMDKRRGFKCGRCGENFRRHDLLQAHMSAVHGIETLNPLTPPRRVASQPLPTLLACIYCTRDTFTSMEQLQLHEFNGDVTRNKRINNNNGEETPCDLPGDNGPIPPPEDRRRKNGAVALQCAYCGERTRSRADLEAHTRAHSGNTVARHKCLICDEVLPSAAILAEHKLTHCKVVAGDTCARCRSRLPSEDAFLTHMARHHPTLPAPCIICRQTLASEAEARLHARFHLRPSEDEQRCAICLTTLTESECGGGVRACSSCYARHSTPRPPPPTDSDCRLCRRSLESPTRLQTHLIEHTFAGIGSFSCYLCSAVFTSAAGLQRHLPEHPTASRPYDCGRCGLKFFFRAELDNHALIHLEEAELAQRAFYEAYARGAVTAWAAMQSETSPKPLPPGPSTTTELKVKQENEIKEEKNDEYIEVSSPPPPPVDPEPSDPTKVVVKQEKPEEDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -