Basic Information

Insect: Leptidea reali
Gene Symbol: RTase
Assembly: GCA_949711725.1
Location: CATIXN010000017.1:2973550-3018677[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.11 13 7.5 0.2 2 23 450 471 449 471 0.89

2 17 0.0051 0.63 11.7 0.0 1 23 481 504 481 504 0.95

3 17 0.035 4.4 9.1 3.6 2 23 835 856 834 856 0.95

4 17 0.63 79 5.1 2.6 1 23 867 890 867 891 0.91

5 17 0.00023 0.029 15.9 0.3 2 23 897 920 896 920 0.97

6 17 0.077 9.6 8.0 0.2 1 23 926 948 926 948 0.93

7 17 0.0024 0.3 12.7 3.3 1 23 954 976 954 976 0.98

8 17 1 1.3e+02 4.5 0.1 1 19 986 1004 986 1007 0.81

9 17 0.12 15 7.4 2.0 1 23 1081 1103 1081 1103 0.98

10 17 2.3 2.8e+02 3.4 7.2 1 23 1110 1132 1110 1132 0.95

11 17 0.0015 0.19 13.3 1.8 1 23 1164 1187 1164 1187 0.95

12 17 0.0044 0.54 11.9 0.7 1 23 1194 1217 1194 1217 0.97

13 17 0.11 14 7.5 0.0 2 23 1238 1260 1237 1260 0.92

14 17 0.54 67 5.3 1.0 2 21 1283 1302 1282 1303 0.93

15 17 0.0017 0.21 13.2 1.9 2 23 1326 1347 1325 1347 0.97

16 17 3.8e-05 0.0048 18.4 0.1 1 23 1353 1375 1353 1375 0.98

17 17 0.0001 0.013 17.0 2.4 2 23 1382 1404 1381 1404 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.11	13	7.5	0.2	2	23	450	471	449	471	0.89
2	17	0.0051	0.63	11.7	0.0	1	23	481	504	481	504	0.95
3	17	0.035	4.4	9.1	3.6	2	23	835	856	834	856	0.95
4	17	0.63	79	5.1	2.6	1	23	867	890	867	891	0.91
5	17	0.00023	0.029	15.9	0.3	2	23	897	920	896	920	0.97
6	17	0.077	9.6	8.0	0.2	1	23	926	948	926	948	0.93
7	17	0.0024	0.3	12.7	3.3	1	23	954	976	954	976	0.98
8	17	1	1.3e+02	4.5	0.1	1	19	986	1004	986	1007	0.81
9	17	0.12	15	7.4	2.0	1	23	1081	1103	1081	1103	0.98
10	17	2.3	2.8e+02	3.4	7.2	1	23	1110	1132	1110	1132	0.95
11	17	0.0015	0.19	13.3	1.8	1	23	1164	1187	1164	1187	0.95
12	17	0.0044	0.54	11.9	0.7	1	23	1194	1217	1194	1217	0.97
13	17	0.11	14	7.5	0.0	2	23	1238	1260	1237	1260	0.92
14	17	0.54	67	5.3	1.0	2	21	1283	1302	1282	1303	0.93
15	17	0.0017	0.21	13.2	1.9	2	23	1326	1347	1325	1347	0.97
16	17	3.8e-05	0.0048	18.4	0.1	1	23	1353	1375	1353	1375	0.98
17	17	0.0001	0.013	17.0	2.4	2	23	1382	1404	1381	1404	0.96

Sequence Information

Coding Sequence: ATGACTGACCCTCAACCATTGGTTCTCTGTATGGAGAACGTTAATGGAGATGAAGTGGCGTTGAAGATTGATCCGCATGATGACTTCAGACTATTTCTTGATAAAGCCAAATCCCTTCTAGGCTTTGAAGTAGACTTAAATTCTGTAACAGGCAATCAGCCTGTATCATTAGATGATAACATGTACCAGTTTCTGCTAAAATCTGAACAACACATGGGCACTACCTCTGAAGCACCTGCATACGATCCCGTACTTGATTCTAATAACAATGACGATTTGGTTTACATTCTTGATGACGGCACTCAGATCAGAGCTTCTCAGATACAATTTGACAATGAAGACCCTATTATAGATCTCTCGTCCGAGAGAATACCTTTTGTGCAGTACAATGATGACTATGTTGAAGATTGTTCGGAAAATCTGGAGAACGTCAGTATAAAAGATGTTCCGCTGGATAGCCCTGCTTCTAGATGGTCCATGCTAAACTCTAGCCCAAAGAATTTCGTGAATACCATACCATTTAAACAAGTTTGCAATAATACGTCAAATTTTGAAActcattttgctaaatatttGGAGTCAGTTGCTAAAACTTATACAACCTTGAACCCAGTTTCAAAAAAGGTATCTCCAAGGACGCTGAGTAAAGAGAGTTACAAAACAAACGAATATCAGAATAAAAACGATATTTTCACTCGTGAAGACGTTTTGAACATGTTTAAAGACTCTCCTGTAACTCCTTTACCGTAtgataaaagtataaattatgataaaagAAAGCATGCCCGTAAAACTGATCCTTTGAgaggtataaataaaaattggttttgTAAATCAGACCTAGGTTCAAATCAGAATCAAGAATGCTGTATATGTAGTCGAATTGTAGAAGATAATTTGGAAAAGATGTATTTATTTGATAACGAGGATCAACGTATACATAGATGCTCGCCGCAAAAGCGGATGACAATGCAATTGAAGATAATTTGCGAAAACTGTTTGGCGGAAAACTTTAAGCTCTGTCTTGTTAAAAGTCCTACGGAATCTCTTAATTCTGACGagtatttagtaataaaaaataaccagcaatatatttttaaaaaggatACTGACGTTTCTTTGAAAAAACCAGAAGAAAAGGTTCAACAGAATAAAGAATTGAATATTAACCAAAGAACTGATGGAGAAAATGTGAGAGGTGATGTAAAAGATAGTTCCAGTGACGTAGAAATCGTAGAACCGGAGATTGAGATTGATAAAGTGATTGATAATCTTGATGATGCTGATGAAGAGGTTAAGGAGTTTCTGGGGAAGTACCAAGTTGCTAATGATAAAAGTCAGGAATTGAAATGCAGGTTTTGTGACAAAATATTCAGCGACGTGAAAGACGTAATGGATCATGGCGAGGAACATAAACATGACTTTGATGATGGCTCCGTATTTCCGTGTCCCTTGTGCGATTATGGATATGCAAATCTGAAATGGTTAAAGGGCCATCTCAAAGCGGCTCATGACAAGCCAAACGACGCGGAAGATGGCGCTGTTATTAAAAAGGAGGtaacatcagtattttttgatatgagcaaagcttttgacaatgtttgtcatgaaaatctattagataaatgcgctcaatatggtattcgaggtctagcaaatgactggcttaaaagttatctttcaaaccgcactcaatacgttgaaattgctaaattaaataataaacaagaagtaataccttatcgatcagaacttagacttaaaacaaaatgtgtaccacaaggaagtatattgggtccacttctattcataatctacataaacgacttacctagcattactacttataacagtactctttttgctgatgacatctctattgtaattaaatgtaacaatgaattgacatatgatatagaagttaataaaacaataaaggacacaattgaatggcttactgaaaataacctgactgtaaatataaaagaaacaatgtatatgcagtattataataagaatgggaaaggaaaagatattaatgttaattatcataatgagaatattaaagaagcacaacttgtcatttttcttggtattacttttgacagcaacttgtccttcaagtcacatattgacaaaattagcaaaaaaattaaccaacatgtatttgtcctcaaacgcgtatcaaaaacaataggtgaaaaaacagcgctaatggcgtatcatgcattcgtggtttcagctttaagatatggattggtcatatggggcaactcggtgagcaaagggcatttatttattggacagaagaagtgtatcagggcgGTgcagcatataaaatttgaaacggAAATAAAGCAAGAGGCGATTGACAGCGACGACGAAGCCATCTGGATAGTTCACACTGGGGATGATGTGCAAGAAGAACAATTGCACAAACTGCTGAACGCCAATACGAAGGTGAAAAGGACTAAGAGCCGAGAGAACGCTTCGCAGATAGTCACGTGCCATAACTGTAACGAGTCGTTCTCGTCTAAAGTGAGACTCAAGTTCCATATGCAATTCCACGATAAAACGGACTTGCTGACACCAGAGGGATACTCGTGTAAGGAGTGCAGCCTTACTCTGGCGACGGAGACGGAGTTGTTCGACCATGTGCACTTCCAGCATCACAAGCAGAAGAAGTGGCAGTGCCCGGTCGAGGAGTGTGGAAAGATGTTCTTCTTGAGGGCGACGTTGACGAAGCACAGCCGGACGCACACAGACACGAGGCGCTACGTGTGCGTGACCTGCGGGAAGCGGTTCCTGGACAAACAGACGCTAGACGAACACGGCGTCACGCATTTACAGATTAAACCGTTCCAATGCCACATATGCCTTAAGCAGCTAACTCGGCGCTCTCGTCTTCGGATGCACCTGCGAGCTCATGAGGAGGAGGTCTGCATGAAACTGGTGTTCGCTTGTGGTGTCTGCAAGCGTGCGTTCAGGAACGACATCGAAGCTCAGGAACACACGGCGAAGTCTACAGAATGCATTGAAGAGTTCACGAAGATGTTGAAGGGTGAGGAGGTCGATCAATTGTCTCCCACCAGCGGCGTCGTCAGATCTTCAAATAAATCTGTTACGTCGCTAAACGTACCGATACCGCGGGAGGCGAGCTCTGAAGATAGTGCCGCTATGATAAGCTCTCTGACCGACGCGGCGCGGTCTATCATCCGCGTGGTTCGTATCGAGAAGGCATTCCGCTGCGAATACTGTGAAGACGTGTTCTACCTGGAGCATTCCCTAAACTCACATCGCGCTAAGCATAAGGGTATCAAGAACCCATTTACGTGTCATATATGCAAAGTGAGCTTTGCGACCTATTCTAGGTGCACCACTCACAAGACCACTCACGGGTTCTACAAACGCAACGCCACTGAAGGAACCAGCGGTGGTGCGGGTAGTACTGGTATCCTAGGCTACGGAGGCTTCCCCGTTGTGAAGCACTTTTTGTGTGAGGATTGCGGCCGCTCGTACCTGCACTGGACGTACCTGCAGGTACACAGACGCATGAAGCACGTCAATGAGAACTTCCTCTTCAAATGCAACCAGTGCGAACTGACGTTTCCAAACAGttggAGCGTTGCGTATCATAGGAAAAAAGTGCACGGCAAAACTGCACAGGAAGACGGTGGTACAACCAAGATTGCAAGGCAGGATTATAAAATACCATGCCGCGATTGCGACGCGGTATTGCCTAACAAGGTCGCTCTCTACAAGCACAGGCAGGACGAGCATTGCGACGACGCATTCGATATGGACGAGAATGAGGAGTGGCCGGAGTCTGTAAACAAGGATAGCACGGTGTGCAACAAGTGTGGACATAACTTGCACAATGTGAACGCGCTACAGAAACATTTGCAACAGTCTATGTTAGTATTAACTTCCAGCGAAGTGCACGGAGTTCAGTCGGACAAACTGCACCCGCGTCTGAAGTGCCACATGTGCTCGCGAACGTTCCGCTCGGCGAGCGCGCGCGACGACCACTTGCGCGTGCACACGGGCGAGCGGCCGTACCCGTGCGACGTGTGTGGCGCGTCCTTTACACGCTCGACCGCGATGCGCAATCACCGCCTAGTACACTTGGCTGTGCGGGCTTGGTCGTGCTCGCGGTGTTCCAGAAGGTTCCGCATGCGTTCGGACCTGCGCACGCATATGAGAATCAAACACCCCGCCTACTTGGCGGTCATCGAGATTGAAGGCCTCAATCCATCACTGGAACAGATATATCAAAAGCTTGCGGTACACAATATCAGCCAGCAGAAGGTTATCGAGATCAATATGATTTCCTTTGAGAAGGGCTCAACGAGCATCGTACCTGACTCCCGGCTTGCCCTGTCCATGTTGAACAACGTACCGCGCACTCCGATCATACGATCCAAGAGCGAATCACATGATATGTTTCAAGCGAGTTGCAGCCGGGACATAGATAAAGGTGCTTACACACCCGCGACGTTACAACGCACTGACCAAATGAGCACCGACCCTAATAGAACCTATCCGATCATTAGCACAGATGCTATTCAACCAATAAACGTGCAAGTTCTTCTAGAAGACAACGCCCTGGTATCTAACCAATTGCTGCAGTATAGAAATGATATTGTTTTGCAATAA
Protein Sequence: MTDPQPLVLCMENVNGDEVALKIDPHDDFRLFLDKAKSLLGFEVDLNSVTGNQPVSLDDNMYQFLLKSEQHMGTTSEAPAYDPVLDSNNNDDLVYILDDGTQIRASQIQFDNEDPIIDLSSERIPFVQYNDDYVEDCSENLENVSIKDVPLDSPASRWSMLNSSPKNFVNTIPFKQVCNNTSNFETHFAKYLESVAKTYTTLNPVSKKVSPRTLSKESYKTNEYQNKNDIFTREDVLNMFKDSPVTPLPYDKSINYDKRKHARKTDPLRGINKNWFCKSDLGSNQNQECCICSRIVEDNLEKMYLFDNEDQRIHRCSPQKRMTMQLKIICENCLAENFKLCLVKSPTESLNSDEYLVIKNNQQYIFKKDTDVSLKKPEEKVQQNKELNINQRTDGENVRGDVKDSSSDVEIVEPEIEIDKVIDNLDDADEEVKEFLGKYQVANDKSQELKCRFCDKIFSDVKDVMDHGEEHKHDFDDGSVFPCPLCDYGYANLKWLKGHLKAAHDKPNDAEDGAVIKKEVTSVFFDMSKAFDNVCHENLLDKCAQYGIRGLANDWLKSYLSNRTQYVEIAKLNNKQEVIPYRSELRLKTKCVPQGSILGPLLFIIYINDLPSITTYNSTLFADDISIVIKCNNELTYDIEVNKTIKDTIEWLTENNLTVNIKETMYMQYYNKNGKGKDINVNYHNENIKEAQLVIFLGITFDSNLSFKSHIDKISKKINQHVFVLKRVSKTIGEKTALMAYHAFVVSALRYGLVIWGNSVSKGHLFIGQKKCIRAVQHIKFETEIKQEAIDSDDEAIWIVHTGDDVQEEQLHKLLNANTKVKRTKSRENASQIVTCHNCNESFSSKVRLKFHMQFHDKTDLLTPEGYSCKECSLTLATETELFDHVHFQHHKQKKWQCPVEECGKMFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEEVCMKLVFACGVCKRAFRNDIEAQEHTAKSTECIEEFTKMLKGEEVDQLSPTSGVVRSSNKSVTSLNVPIPREASSEDSAAMISSLTDAARSIIRVVRIEKAFRCEYCEDVFYLEHSLNSHRAKHKGIKNPFTCHICKVSFATYSRCTTHKTTHGFYKRNATEGTSGGAGSTGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHVNENFLFKCNQCELTFPNSWSVAYHRKKVHGKTAQEDGGTTKIARQDYKIPCRDCDAVLPNKVALYKHRQDEHCDDAFDMDENEEWPESVNKDSTVCNKCGHNLHNVNALQKHLQQSMLVLTSSEVHGVQSDKLHPRLKCHMCSRTFRSASARDDHLRVHTGERPYPCDVCGASFTRSTAMRNHRLVHLAVRAWSCSRCSRRFRMRSDLRTHMRIKHPAYLAVIEIEGLNPSLEQIYQKLAVHNISQQKVIEINMISFEKGSTSIVPDSRLALSMLNNVPRTPIIRSKSESHDMFQASCSRDIDKGAYTPATLQRTDQMSTDPNRTYPIISTDAIQPINVQVLLEDNALVSNQLLQYRNDIVLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00874747;
90% Identity: -
80% Identity: -