Lrea018574.1
Basic Information
- Insect
- Leptidea reali
- Gene Symbol
- -
- Assembly
- GCA_949711725.1
- Location
- CATIXN010000015.1:2733275-2736317[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.5 4.4e+02 2.8 5.6 1 21 70 90 70 93 0.85 2 22 0.45 56 5.6 5.9 1 21 164 184 164 186 0.95 3 22 0.005 0.62 11.7 0.5 1 23 190 212 190 212 0.97 4 22 0.034 4.3 9.1 0.5 1 23 217 240 217 240 0.96 5 22 0.1 13 7.6 0.7 1 23 246 269 246 269 0.92 6 22 0.0057 0.72 11.5 0.2 1 23 336 358 336 358 0.97 7 22 0.38 48 5.8 0.1 3 23 384 405 382 405 0.91 8 22 0.021 2.6 9.8 4.5 1 23 427 449 427 449 0.99 9 22 0.00027 0.033 15.7 1.2 1 23 453 475 453 475 0.98 10 22 0.0024 0.31 12.7 0.4 1 23 480 503 480 503 0.96 11 22 0.0012 0.15 13.6 1.7 1 23 509 532 509 532 0.96 12 22 0.012 1.6 10.5 0.0 1 23 538 561 538 561 0.97 13 22 0.0069 0.86 11.3 1.3 1 23 609 631 609 631 0.88 14 22 2 2.5e+02 3.5 1.6 4 23 657 677 654 677 0.89 15 22 0.0045 0.57 11.8 1.4 1 23 699 721 699 721 0.97 16 22 0.00019 0.024 16.2 1.2 3 23 727 747 726 747 0.97 17 22 3.4e-05 0.0042 18.6 1.5 1 23 754 777 754 777 0.94 18 22 9.1e-05 0.011 17.2 1.8 1 23 783 806 783 806 0.97 19 22 4.9 6.2e+02 2.3 2.9 1 23 812 835 812 835 0.93 20 22 0.0019 0.24 13.0 0.5 1 23 841 863 841 863 0.95 21 22 7.6e-06 0.00096 20.6 1.4 1 23 869 891 869 891 0.99 22 22 0.0016 0.2 13.3 5.4 1 23 897 919 897 920 0.95
Sequence Information
- Coding Sequence
- ATGGAAACTGAGGTTTTAATAGAAGTTAAGCCTTGTAGAAAATTAAAGGAACACGTAGGGGAAAGACAAATGCGTCGCCGTAGGCGCGCTAACAATGAATTATCAGAAGACGCTGAAAAACGTTTGGCTactaaaatgatgaaattaaatGCCAAAATCATTTTAGATAGTTCTTCAGCTTACCCTTTCCGGTGGTATAGAGGTGCTTTCTGTTGCTGTTATTGCGATAAAAGATTCTTACGAACAGAGGAATTACGGGGACATAATAGTTTAAATCACTCTTATCCAAAACAGTTGAAGCTGATCTTTGAAAAGCTGAAAGGCAATAACGCATTAAAAATTGATGTATCTGACTTGAAGTGTAGATTTTGTTGTGTACGTTTAACTGATATAGAAGATCTTAAAAAACATTTGGCATtagaacataataaaattttgaataataaatttagtgACGGGGTGATACCTTTTAATTTTGATCTGAAAAACTTTCAGTGTACTAAATGTGCAGCTTGTTTCACAACTTTTTCGAAAATAAACGAACATATGAATTGTCAttataagaattttgtttgtgaAGCATGTGGTAAAGCTTTCTTTTCAAAGCAGCGTTTTTGGATGCACGTTCAGTCACACGAAGTAGGAACCTTCCCCTGCAGTCAATGCAGTGAGGTTTTTGACACGAGAATTACTCGTACTATTCATAGGTTGAAAATCCACCGTAAAGGTATTAGATATACATGTCCTCAATGTTCGGACGTTTTTACATCGTATTACGCTAGAGTTAGACATTTGAGTGATAAACATAATGCTGATAAAaattttaagTGCAGCAAAATTGAAGGATTGTTTAGGAGAAGAGAGATATTAGAAGATAAAGAATGCTCTAGAAGATCCTCAATGATTTCATGGAGAAAAAAGTCAAGATTGGCAGAAGAAAAAGCAAACGCAGCTATTATCTTAGAAAATTCAAACGCTGTTGCATTTCGGTGGTTGCGTGGAAAATTTATGTGTGCCTATTGTCCAAAAATTCTTGTAAATATGAAAGACTTAAGATCTCATACAGAATCTCATGATAAAACTGAGCTCTTTAGCAAACGAGGAATTCGGTATTACTTACCTATTCGGGTCGACATAACAGATCTAGCATGTAATATTTGTAAAGAAAGTATCAAGGATTTAACTGTTCTAAAGTTACATTTGACGGAAACACATGATATTAAGTTCTTACAGCAGTATCCAGATGGCGTTGTACCGTTTGTTTTAACTGGGGACGAATACAGATGCGTCCATTGTGGGATTCTGTTCCACCAGTTCATGACATTGTTCGTTCATATGAATAAACATTATCAAACTTACGTTTGTGATACATGCGGTAAAGGATATTCTGGTGTACATAAGTTACGGTCCCATTTAAAAAGTCACGAATCTGGAAATTTCGTGTGTTCCAAATGTGACTTGAATTTTATCAATCGTGTACTCAGAAGTAGACACATGTCTGTGATTCATGGGCCTAAGCAACGCTATCGGTGTCCCATTTGTGATACCACTTTCGATTCATTTCACTCTCGAGTGAGGCATTTAGATAAAGTACACGGACAAAGGTCTGAATACCGATGTGAATTTTGTCCAGCTGTATTTGGTTCTGCTGCATCCATATATGCGCATGTCAGGGTTGTTCATAAGAAAAATGGAAgACCTGTTGAAACAGAACATAAGAGAAGTATGTGGACACCAAAGCGCAAGTTTAACGATCACAGAGACAATGCGGCTATAATTATTGAATGTTCAAACGCGTGTCCTTTTAGGTGGATGCGGGGTGCTTATAAATGTGGCTATTGTACGAAGTCGTTTACTGATTTTAAGGCCATCTACGAACATACTGTTGAGCATCCTAACAGGGTTGAGACTCTCAAGTTTGCCCGTGCATtcgataatattaaaattgaaataactgATCTCGAATGCATATTATGTAACCACAAAACTTGTGATTTAGATACGTTGAAGGATCACCTTGTGACAGTACACAATAaaccaattattaaaaatctagGATTAGGAGTAACACCATTTCTGCTCAGAAGCAAGGAATTTGTTTGTGCACATTGCGAAGAGAGATTTATTctctttacaaaattaaataatcatatgaaTGAACACTATCCTAATAATATATGCTCACATTGTGGTAAAGCCTTTTCGGCTGCTCATCGACTTAAAGCACATCAAATCATCCATGAGCCTAATAACGCAGAATATAAATGTACGAAATGCGACAAAGTTTTCGAATCGAAATCGCAAAGAAATAGCCATATCTATCTAGCACATAAGTCTGAATTTAGATATAAGTGCCCTTACTGCAACGAAGCATTCAAATCATACTCGAAACGATTAAAACATTTGAACAGTCTGCACGGCCAAAAGGTTGAATATCCGTGTCATTTGTGTCCGTCCGTGTTTCTAATGTACAACCAACGCACGAAACATATCCGGCACGTGCATATACAACATAGGCCATTTTTATGCGAACAGTGTCCATCCAAGTTTAGCACAGGCGAACAGTTGAGGAATCATATGGTGAAACATAGCGGAGAAAGAAAGTACCAATGCGAAGTATGTAAGAAAAAGTATCCAAGAATGAAAACCCTAAGGGAGCATATGAGAATTCATAAAAATGATAGACGTTTCGCTTGTCAATATTGTAGTAGTGCGTTCATACAGAAGTGTAGTCTTAAAAGTCATCTTAGGACTCATCATCCAAATGTTGATATTACGCAATGA
- Protein Sequence
- METEVLIEVKPCRKLKEHVGERQMRRRRRANNELSEDAEKRLATKMMKLNAKIILDSSSAYPFRWYRGAFCCCYCDKRFLRTEELRGHNSLNHSYPKQLKLIFEKLKGNNALKIDVSDLKCRFCCVRLTDIEDLKKHLALEHNKILNNKFSDGVIPFNFDLKNFQCTKCAACFTTFSKINEHMNCHYKNFVCEACGKAFFSKQRFWMHVQSHEVGTFPCSQCSEVFDTRITRTIHRLKIHRKGIRYTCPQCSDVFTSYYARVRHLSDKHNADKNFKCSKIEGLFRRREILEDKECSRRSSMISWRKKSRLAEEKANAAIILENSNAVAFRWLRGKFMCAYCPKILVNMKDLRSHTESHDKTELFSKRGIRYYLPIRVDITDLACNICKESIKDLTVLKLHLTETHDIKFLQQYPDGVVPFVLTGDEYRCVHCGILFHQFMTLFVHMNKHYQTYVCDTCGKGYSGVHKLRSHLKSHESGNFVCSKCDLNFINRVLRSRHMSVIHGPKQRYRCPICDTTFDSFHSRVRHLDKVHGQRSEYRCEFCPAVFGSAASIYAHVRVVHKKNGRPVETEHKRSMWTPKRKFNDHRDNAAIIIECSNACPFRWMRGAYKCGYCTKSFTDFKAIYEHTVEHPNRVETLKFARAFDNIKIEITDLECILCNHKTCDLDTLKDHLVTVHNKPIIKNLGLGVTPFLLRSKEFVCAHCEERFILFTKLNNHMNEHYPNNICSHCGKAFSAAHRLKAHQIIHEPNNAEYKCTKCDKVFESKSQRNSHIYLAHKSEFRYKCPYCNEAFKSYSKRLKHLNSLHGQKVEYPCHLCPSVFLMYNQRTKHIRHVHIQHRPFLCEQCPSKFSTGEQLRNHMVKHSGERKYQCEVCKKKYPRMKTLREHMRIHKNDRRFACQYCSSAFIQKCSLKSHLRTHHPNVDITQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -