Basic Information

Insect: Leptidea reali
Gene Symbol: -
Assembly: GCA_949711725.1
Location: CATIXN010000007.1:5618043-5626758[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.8e-06 0.00035 21.9 1.7 1 23 237 259 237 259 0.98

2 9 2.7e-08 3.4e-06 28.3 1.6 3 23 267 287 265 287 0.98

3 9 9.2e-05 0.012 17.2 0.3 1 23 293 315 293 315 0.98

4 9 9.9e-06 0.0012 20.2 1.7 1 23 321 343 321 343 0.99

5 9 2e-05 0.0026 19.2 1.7 2 23 446 467 445 467 0.96

6 9 2.6e-09 3.3e-07 31.5 1.6 1 23 473 495 473 495 0.98

7 9 0.0022 0.28 12.8 0.6 3 23 503 523 501 523 0.97

8 9 5.7e-05 0.0072 17.8 1.5 1 23 529 551 529 551 0.99

9 9 0.018 2.2 10.0 0.8 1 23 557 581 557 581 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.8e-06	0.00035	21.9	1.7	1	23	237	259	237	259	0.98
2	9	2.7e-08	3.4e-06	28.3	1.6	3	23	267	287	265	287	0.98
3	9	9.2e-05	0.012	17.2	0.3	1	23	293	315	293	315	0.98
4	9	9.9e-06	0.0012	20.2	1.7	1	23	321	343	321	343	0.99
5	9	2e-05	0.0026	19.2	1.7	2	23	446	467	445	467	0.96
6	9	2.6e-09	3.3e-07	31.5	1.6	1	23	473	495	473	495	0.98
7	9	0.0022	0.28	12.8	0.6	3	23	503	523	501	523	0.97
8	9	5.7e-05	0.0072	17.8	1.5	1	23	529	551	529	551	0.99
9	9	0.018	2.2	10.0	0.8	1	23	557	581	557	581	0.95

Sequence Information

Coding Sequence: ATGCTATCGGTGCATGCGCAGGCGCAGGAAGGGGGCGTCTGGCTGGACCAGTTCGACTTGATCAAGGACTTACACCCTAGTGCCACACATTCTATTGATACCACTGCACCATACGTGCTGTACAAAGACGGCGTGGAGCGAGCTCCCCCAGGAACACAATGGGGAGGAACCGTTCTCGACGGTGGCTACCAGACGATGCAACATCAAAGTCCCGGAGGACCGTCACCGCAGCCAGAACCACAGCTCGCATCACCGGCTCCATCCCCGTACCCACCAGCGCCCCCACCACCCGATCCCTCGGCAGAAGAAGCTGCGCAGTTAGTGCAGCAACAAGCCCAGCAACAGGCTCAGCAACAAGCTCAGCAACAGCAACAAACTTCTCCGGAACACATGCAAGTTGACCAGCTCCAGAACCAAACGCAACAGCCACAGCCACCGCAAGACCATTTAGACCGCACTCCGTGCTTCATTCCACAACCTGACTTACAACAACAATACACGCCATACTTTAAAGAGGCGCGACCAACTAGCCACATGCTTGGAACTGGAGGCTTTCCACTACACTACCTGAAACAAAATGGAGGAGTGTTATCGTTGGAAGGCCCGCTAGACCAATACACAACGCCAGACTTGAGACATTTACCAGACATTGTTCAACCAGAACAACCGAAACCACGGAAGCACAATCCGAACTCAGAACTGCGCCTATTCAAGTGTCTTACTTGTGGAAAAGATTTCAAGCAGAAGTCAACCCTTCTCCAACACGAGAGGATTCATACAGACTCAAGGCCGTATGGGTGTCCAGAATGCGGCAAGCGGTTCCGCCAGCAGTCCCACCTGACCCAGCACCTGCGCATCCACGCCAACGAGAAACCGTACGCTTGCGTGTACTGCCCACGCTCGTTCCGCCAGCGGGCGATCCTCAACCAGCACCTGCGCATCCATTCCGGTGAGAAGCCCTATACGTGCGGCGAATGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAATCAGCACGTCCGAACACACCAAGATGTATCGCCGCATCTTATTTTCAAGAATGGGACTACGCCCACGCTTTGGCCCCAAGATGTTCCATATCCACCCGACGAGAACAAAGAAGAAATTCAGTCAACGTATGGAGATGTTGACGGCCAAAATGGTGAACAGCGCGGATCGTGCTTTTCTCCAGGAGATACAGCACAGTACCCTGCATACTTCAAGGATACTAAAGGTCTTAATCATACGGTGTTTGGCCCAAGCCTATCTCTGCAATATTTGAAGGGTGGTAAGCTCCCAGACGTTTTAGGCGGTCGCGCAATGCCTCTTTATGTGCGTTGTCCTATTTGCCAGAAAGAATTCAAACAAAAGTCAACATTGCTCCAACACGGATGTATTCATATAGAATCGCGGCCGTACCCGTGCCCAGAGTGTGGCAAACGTTTTCGCCAGCAATCCCACTTGACTCAACACTTGCGCATTCACACAAACGAAAAGCCTTACGGCTGTGTGTATTGCCCGCGGTTTTTCCGCCAACGCACTATTCTCAATCAGCATCTCCGCATACACACCGGTGAGAAACCCTACAAGTGTACCCAATGTGGGAAAGATTTCAGGCAAAAGGCTATTTTGGACCAGCACACACGGACACACCAAGGCGATCGACCATTTTGTTGTCCCATGCCCAACTGTCGGAGGCGTTTCGCCACAGAGCCAGAAGTTAAGAAGCATATCGATAATCACATGAACCCGCACGCGGCTAAGGCTCGCCGAGCGGATGCGAAGACTCCCCGACCATTGCCACCCGCGTCTGCTGTAGTGAAGCCCGAGCTTTATTTCCCTCAGTGCTACGCGCCACCTTTCCAGCAGTTTTCAACCGGCGGTCCCGAGTTCAAGCCAGCCGTAGGCCCCGGCGCGACGGTGGCGTGTCTTCCGGCCCAGTGA
Protein Sequence: MLSVHAQAQEGGVWLDQFDLIKDLHPSATHSIDTTAPYVLYKDGVERAPPGTQWGGTVLDGGYQTMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPPDPSAEEAAQLVQQQAQQQAQQQAQQQQQTSPEHMQVDQLQNQTQQPQPPQDHLDRTPCFIPQPDLQQQYTPYFKEARPTSHMLGTGGFPLHYLKQNGGVLSLEGPLDQYTTPDLRHLPDIVQPEQPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQDVSPHLIFKNGTTPTLWPQDVPYPPDENKEEIQSTYGDVDGQNGEQRGSCFSPGDTAQYPAYFKDTKGLNHTVFGPSLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKARRADAKTPRPLPPASAVVKPELYFPQCYAPPFQQFSTGGPEFKPAVGPGATVACLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00358842;
90% Identity: iTF_01363324;
80% Identity: iTF_00874685;