Lrea018787.1
Basic Information
- Insect
- Leptidea reali
- Gene Symbol
- -
- Assembly
- GCA_949711725.1
- Location
- CATIXN010000015.1:4076351-4086477[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.09 11 7.8 0.2 1 23 78 101 78 101 0.94 2 26 0.11 13 7.5 0.8 2 23 124 145 123 146 0.94 3 26 4 5e+02 2.6 0.3 3 23 170 190 169 190 0.96 4 26 0.001 0.13 13.9 0.4 1 23 260 282 260 282 0.98 5 26 0.0022 0.28 12.8 1.0 1 23 288 310 288 311 0.95 6 26 3e-05 0.0037 18.7 3.8 1 23 340 362 340 363 0.95 7 26 7.7e-06 0.00096 20.6 0.8 1 23 367 389 367 389 0.97 8 26 0.00013 0.016 16.7 2.1 1 23 395 417 395 418 0.96 9 26 0.11 13 7.5 0.5 1 22 522 543 522 545 0.90 10 26 1.9 2.4e+02 3.6 0.2 2 23 570 592 569 592 0.92 11 26 0.00015 0.019 16.5 0.9 2 23 615 636 614 636 0.97 12 26 0.0031 0.38 12.4 1.1 2 23 641 663 640 663 0.95 13 26 0.011 1.3 10.7 3.2 1 23 668 691 668 691 0.97 14 26 0.075 9.3 8.0 4.0 1 21 700 720 700 723 0.91 15 26 0.0076 0.95 11.1 0.4 2 23 731 753 730 753 0.96 16 26 0.0041 0.52 12.0 4.5 1 23 759 781 759 781 0.98 17 26 2.6e-06 0.00032 22.1 1.4 1 23 787 809 787 809 0.99 18 26 0.032 4 9.2 0.2 1 23 879 902 879 902 0.92 19 26 0.063 7.9 8.2 0.0 2 23 929 951 928 951 0.95 20 26 0.019 2.3 9.9 0.1 1 23 999 1021 999 1021 0.95 21 26 0.0094 1.2 10.9 3.1 1 19 1026 1044 1026 1046 0.89 22 26 0.98 1.2e+02 4.5 1.1 2 23 1057 1079 1057 1079 0.92 23 26 6.6e-05 0.0082 17.6 1.5 2 23 1087 1109 1087 1109 0.97 24 26 4.5e-05 0.0056 18.2 3.0 1 23 1115 1137 1115 1137 0.97 25 26 1.4e-05 0.0018 19.7 2.0 1 23 1143 1165 1143 1165 0.99 26 26 0.00022 0.027 16.0 3.4 1 23 1171 1194 1171 1194 0.97
Sequence Information
- Coding Sequence
- ATGGTGAAATCGGGCCTAAAAGGAGCCAACATGTGGGAGGACCTGCACTCCGACATGTCGTCGTCTAAGTGGGATGGGTTTGATCGCCGTAACCGCAAAATCAAACTCTGTTTGAACGATGAACGTGCCCCAAACGGTCGTGAGCAAGGTGGAGACAAAAGCAAGGAATATGTAAAGCAAGTACTTAGTAACTCTAACGCCACCCCTTTTAATTGGCACAAAGACTTAAGATTCTCATGTTACGTATGCTCAGAATATTATGGCGATCCAGCTGACTTGAAACTACATACACTGAATTTTCATACGTCGCATGAAATAGAAGAGCACATTGAAACGAGTTTTGCGATTAAATTTGATATTACAGCATTGAAATGCAACCATTGTAATGCAGATGTTGAGACAGTGGAAGATTTGTTGAAACACCTAATTGAACATCATGGAAGACATATGGACAAATTGGTTAATAATGTCTTAGTGCCGTTCaaatttcacaataatttgtcaCTTTGCACTGTATGCCCTGCGGAATTTTTGAAATTCTCTTCATTATATGAGCATACAAAGTTGCATTTCCCCAATCTCAAATACGAATGTTTGAATGAAGGAGAGAGTGTGGTCATTGCCAATGTCAATAAAGGCATGATGAAGCCAAGTCATAACAATAGaccaaacaaaattattgagtGTGATAAAAGGTCGCCAACAgtctcttataaaaataaaaaggaaacaaatcaaaaatattctttaaaaacAGAGGTCCAATGTCCTGTTCTCTATACTTGTTCTATTTGTTCAAATAGTTTTTCCAGCAGCGAGAAGTTGGATGAACATGCTGAAACACATTTAAGCATAGATGCTTTTTCCTGTAAAGATTGTGACATTACATTTAAGGAAAAGTCTATATGGCTCAGACATATAGAGGTTCATCATGATACTATCCACACTTATTCAGAGACTTTTTCCAGCAGCGAGAAGTTGAACAAAAATGCTGAAATACATTTAAGCAAAGATGTTTTTTCCTGTAAATATTGTGATATTACGTTTAAGCAAGAGTCTGAATGGCACAGACATATGGAAGTGCATCATTATACCGTCTATACTTGTTCTGTTTGTTCAAAGACTTTTTCCAGTAGCGAGAAGTTGAACAAACATGCTGAAATACATTTAAGCAAAAATACTTATTCCTGTAAAGATTGTGATATCATGTTTAAGCAGAAGACTGTATGGTTTAGACATATGGAAGTTCATCATGGTGAAATCACTGTTGATAAATGCAAATCAGAGGAAGTTGAAAGGAATTATCaagatttaaatgaaaatagagTTCTTAATTCTGAAGTAGAAGATAATTCAAACAATGacgataatttaaatttgaataggACTGAAGTTGCGTTGAAACACAGACGGGGAGTAAAAAAGATTGATGAAACTGAAGATACGACTTCTGTTGACAGGAAGAAACAACGTAAAGACCACATGTTACAGTATCGGTTAAGTGtatctgaaatattaaaatacacaaatgCCACACGTTTCAGTAATTGCGTTGACAGATATTATAAATGTAGTTTCTGCGATGAGTATTACTTAGACCCTTCGGAGTTGAAGAGCCATAATATCGAAAATCATAATCACGAAGACAAAAGACGTCTAACAGCAAAATGTATGGAAGGATCGTTGAAGCTGGATGTAACAGACTTGCGTTGCTTACTGTGTGATGAAAACATATCCGATTTCACGAATATGTTGAATCATTTGATTGAAAAGCATGAACGGCCGATCTCTTTGGTAGTAACTAAACATATATTGCCGTTTTCGTTCAATGACGATGTCCTGCGGTGTGTGCATTGCGAGAAAGAATTTCCTAATTACGGAATGCTTTACAAGCACATGAATGTTCATTACTGCAATCTTCGATGTGATTATTGTCAGCAATGGTTTATGAACCAAAGTCAGTTGCGTAGCCATTATCGTTACGCTCACGCGCTGGGTCACTTTGAATGTAATATTTGCGAGAAAAAGTTCGATACGAAGCTTAAAATGAAAGGTCACGTTAAGATGTGCCATTTAAAACATTCGCCTAAGCGTATTTATAAATGTCTGTTGTGTAACGAACAATTTACATACTATTCACACAAGCAGAAACATTTGGTTGATAAGCACGCTATTAAATCGTTTAAACAACAATGTAATGCGTGCGACAAAGTGTTTAACTCGACGCGGGCGTATCTGATCCACGTTAAAAGAGATCACTTATTGGAGAGAAAGCATAAATGTGAGCTTTGTAATAAGGAATTTTTCAGGAAAAGGGAAATGAATGATCACTATCTGAAACATACAGGACAGCGGAGCTTCCAATGTGACATCTGCAATAAATTGTTCGCCAGAAAGACGACTCTACGCAGCCATATTCAAACTCACACTAATGACAGGAAAAAATATTCTTGCACTGATTGTGCACCAAGTACCAAAAGAAAACGGAAAGATGAGATTAATGACGTCGATGATATTGTTGAAGAGAGTAATAAAGGTAAAAAGGGCCACGAGTTAAAAAAACACAGATTCAATCTGATTGAAATTTTGAGAAACTCTAATGCGACACCGATCCGATGTCGGGGCGGTATTGGGTACGCTTGCTGTTATTGTAGCGATGAATTCCCTGATCCAgccgatttaaaaaaacacacaattGCTGCACACGATGAAAACTCTAGACTAAGGCTTATGGACGGGAAGGATTTGCACAGATTTCATGCAAAACTTGACATAACGCAACTAAAATGCAATATTTGCAATCGGCCTATTGACAATATCGAGTTGTTGATAGATCATTTGAAGAATGTGCAcagtataaaaatgtatatggaCGTAAAAAATCAGTTGCTCCCGTTCAAATTCAGCGAAAACTCCCTGCAGTGTTTCATGTGTCAAAGCGTCCATCATAAATTCAAATCGCTTTTGGAGCACATGAATGTGCATTACAGAAATTTTATATGCGAAGTGTGCAACGCCGGATTTATCACGAGGTCCGTTTTGGCGCAGCATTCGAAAGCGCACGACATAGGTACGTTTAAATGCCATTACTGCGATAAAGTCTTCGATACGCTGCGGAAGAAACAGAGTCACGAGAAATGTGTACATACGCATTCAGAAGGCCTAAATAGGTGCGCGTACTGCAATGAGAAGTTTGGCGATTATAGGAAGAAGGAGACTCATCTTTTTCGAGTACACGGAGTTGTTTACACCGAGGCGAAATGCCAGGCGTGTGATAAAACTTTCCGAAGCCAAAAAGAATACACTGCCCATATAAAGCGGCTGCATCTAATGGACAGGCGTCATAGGTGCAACGAATGCGATATGTCGTTTTTCACGTCCAACGAACTGAAGAACCACATGGTGAAACATACTGGTGAGAGGATGTTTAAATGCGAGGTGTGCTTCAAGAGCTATGGCCGCCGGAAGACGCTTAGGGAGCATATGCGAATACACGCGGACGATAGGAGGTTCAAGTGCGAACATTGCGGGCAGGCGTTCGTGCAGAAGTGCAGCTGGAGGGGACACATGCGAGCGAAGCACGGCGAAGAAGCGTAG
- Protein Sequence
- MVKSGLKGANMWEDLHSDMSSSKWDGFDRRNRKIKLCLNDERAPNGREQGGDKSKEYVKQVLSNSNATPFNWHKDLRFSCYVCSEYYGDPADLKLHTLNFHTSHEIEEHIETSFAIKFDITALKCNHCNADVETVEDLLKHLIEHHGRHMDKLVNNVLVPFKFHNNLSLCTVCPAEFLKFSSLYEHTKLHFPNLKYECLNEGESVVIANVNKGMMKPSHNNRPNKIIECDKRSPTVSYKNKKETNQKYSLKTEVQCPVLYTCSICSNSFSSSEKLDEHAETHLSIDAFSCKDCDITFKEKSIWLRHIEVHHDTIHTYSETFSSSEKLNKNAEIHLSKDVFSCKYCDITFKQESEWHRHMEVHHYTVYTCSVCSKTFSSSEKLNKHAEIHLSKNTYSCKDCDIMFKQKTVWFRHMEVHHGEITVDKCKSEEVERNYQDLNENRVLNSEVEDNSNNDDNLNLNRTEVALKHRRGVKKIDETEDTTSVDRKKQRKDHMLQYRLSVSEILKYTNATRFSNCVDRYYKCSFCDEYYLDPSELKSHNIENHNHEDKRRLTAKCMEGSLKLDVTDLRCLLCDENISDFTNMLNHLIEKHERPISLVVTKHILPFSFNDDVLRCVHCEKEFPNYGMLYKHMNVHYCNLRCDYCQQWFMNQSQLRSHYRYAHALGHFECNICEKKFDTKLKMKGHVKMCHLKHSPKRIYKCLLCNEQFTYYSHKQKHLVDKHAIKSFKQQCNACDKVFNSTRAYLIHVKRDHLLERKHKCELCNKEFFRKREMNDHYLKHTGQRSFQCDICNKLFARKTTLRSHIQTHTNDRKKYSCTDCAPSTKRKRKDEINDVDDIVEESNKGKKGHELKKHRFNLIEILRNSNATPIRCRGGIGYACCYCSDEFPDPADLKKHTIAAHDENSRLRLMDGKDLHRFHAKLDITQLKCNICNRPIDNIELLIDHLKNVHSIKMYMDVKNQLLPFKFSENSLQCFMCQSVHHKFKSLLEHMNVHYRNFICEVCNAGFITRSVLAQHSKAHDIGTFKCHYCDKVFDTLRKKQSHEKCVHTHSEGLNRCAYCNEKFGDYRKKETHLFRVHGVVYTEAKCQACDKTFRSQKEYTAHIKRLHLMDRRHRCNECDMSFFTSNELKNHMVKHTGERMFKCEVCFKSYGRRKTLREHMRIHADDRRFKCEHCGQAFVQKCSWRGHMRAKHGEEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -