Lrea018788.1
Basic Information
- Insect
- Leptidea reali
- Gene Symbol
- -
- Assembly
- GCA_949711725.1
- Location
- CATIXN010000015.1:4087258-4091029[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.21 26 6.6 1.2 1 23 59 82 59 82 0.88 2 28 0.35 44 5.9 0.0 2 23 109 131 108 131 0.94 3 28 0.0014 0.17 13.5 0.3 2 23 154 175 153 175 0.96 4 28 0.12 16 7.3 0.1 1 23 179 201 179 201 0.93 5 28 0.84 1e+02 4.7 1.0 1 23 206 229 206 229 0.95 6 28 0.00041 0.052 15.1 1.3 1 23 236 259 236 259 0.98 7 28 0.04 5 8.9 0.4 2 23 267 289 266 289 0.95 8 28 0.0085 1.1 11.0 0.7 1 23 295 317 295 317 0.97 9 28 3.8e-06 0.00047 21.5 1.4 1 23 323 345 323 345 0.99 10 28 5.1e-05 0.0063 18.0 3.9 1 23 351 374 351 374 0.98 11 28 0.09 11 7.8 3.1 1 23 438 461 438 461 0.95 12 28 0.14 18 7.1 0.0 2 23 488 510 487 510 0.96 13 28 0.00015 0.019 16.5 1.7 2 23 533 554 532 554 0.97 14 28 0.0013 0.16 13.6 0.1 1 23 558 580 558 580 0.97 15 28 0.057 7.1 8.4 0.5 2 23 616 638 615 638 0.96 16 28 0.0019 0.23 13.1 0.1 2 23 646 668 645 668 0.96 17 28 0.0018 0.22 13.1 0.6 1 23 674 696 674 696 0.97 18 28 3.7 4.7e+02 2.7 0.4 1 9 702 710 702 711 0.92 19 28 0.0026 0.33 12.6 0.5 1 21 769 789 769 792 0.90 20 28 0.041 5.1 8.8 0.0 2 23 820 842 819 842 0.96 21 28 0.0031 0.39 12.4 1.3 2 23 865 886 864 886 0.96 22 28 2.7 3.3e+02 3.1 1.5 1 22 890 911 890 912 0.82 23 28 0.064 8 8.2 1.7 1 23 917 940 917 940 0.94 24 28 0.0062 0.78 11.4 0.8 2 23 948 970 948 970 0.94 25 28 0.0018 0.22 13.1 2.9 2 23 978 1000 977 1000 0.95 26 28 0.0029 0.37 12.4 2.2 1 23 1006 1028 1006 1028 0.94 27 28 4.3e-06 0.00054 21.4 0.5 1 23 1034 1056 1034 1056 0.99 28 28 0.00071 0.088 14.4 4.8 1 23 1062 1085 1062 1085 0.98
Sequence Information
- Coding Sequence
- ATGGGTTCGGGTAATTTGTCTAGTACAGTGAAAAAGTCAGGAATTATCACAATACAAATATCTGGGTCAACGAATCAGCCTAAAGAAAAAGATATAACCAAGCATAGATTTAACGCGAGCCAGTTTATGCAGTACTCGAATGCAACACCAATCAGATACCAAGGGAGTATAGGATTTCTGTGCTGCTTTTGTAATCGACAATACCCCGATCCGGCCGATTTAAAATATCACTCAATAAACGAACACGACGATGACAGCAAGTTCAGTTTTTTGAGTAATAAGAGAATGTGTTCCTACATTGTAAAGATGGATATAACTAATTTACAGTGCAAGATTTGCGCTAAGGACATGGGCGATCTTGACGATTTGGCCAAACATTTAATCTCGGCACACgataaaaaaatttacactGATATAAAAAGCTTTATACTACCATTGAAATTTGGCAAGGAGAACCTTAGTTGTTATATATGCTTGCAAATGTTCAACAGACTCAAAGGGTTGCAGGAACACATGAATGTGCATATGCGCAACTTTGTATGCGAGGAATGTGACGCGGGTTTCCTGAATCAGATGATGTTGAAGAATCACTCTGCGAACCATGAAATCGGTTCGTTCAAATGCGGTTTCTGTGACAATGTCTATGTGTCAATGAAGAGTAAAAAGCTTCATGAGAGAAATGTCCACACTCGTTCCAAATTAATTTACAAGTGTGGTGGCTGCGGTGAGATGTTTCATTCAAATGAATCGAAGAAAATCCATTTGCGGAAGGTGCATAATGTTGTCAGTAAAAGTCTTAAATGCGCCGCGTGCGAGAAGCTATTTCAGAGTCAAAAATCGCTTCGGATTCATGTACAAAGAGATCATCTAGTTGAGAGGAACTTTGAGTGCTCGATGTGTGACATGAAATTCTTCGAGAAACAGGAGATGATCTTGCATATGGTGAAGCATAGCGGTGAAAAACTGTTTCAGTGCGATGTATGCAAAAAGTCGTATGGACGCAAGAAAACGTTGCGGGAGCATATTCGTATTCATTTGGACGATAGACGATTTAAGTGTCAATATTGCGATAAGGCTTTCGTTCAGAAGTGTAGTTGGCGCGGGCATATGCGAAGCAAGCATGGTAGTCCAGATAATACTGACTCGAGAGAATCAGATAACGTATCTGGGTCATGGAATAAAACTGGGGCTATTACAATCAATTTACGCGGAGACGCTCAAGTAAGAGACATTACAAAGCACCGGCACAATGCGAGACAATTTATACAGCTCTCGAATGCAACTCCGATTCGATACCAAGCCAGTATGGGATTCGTTTGCTGTTTTTGCTATGAACAATTTCATGATCCGGCCGATTTGAAATCTCACACGATGAATGATCACGACGATAAATGCAAGTTAAAATTTATGAGTGGCAAATCGATATCAACTTATATTGTCAAAATGGATATCACAAATTTACAGTGCAAATTGTGTGCGGAAAACTTGATCGACATTGATGCCTTAACTAAACACTTGATAACAgttcacaataaaaaagtatacaCGGACGTAAAAAGCTATATAGTGccatttaaatttgaaacagaAGATCTGCGCTGCTGTATGTGCTCTCAAGTTTTCAGTAGACTCAAAGCATTGCAAGAACATATGAATGTTCACATGCGAAATTATACATGCGAGATTTGTGATGCGGGTTTTCTGAATCAAAAAATGCTGAAGAACCACATGGAGGGTCACGAGAGTGGCTCATTTAAATGCGATTTCTGCGAAAATGTTTACGCATCAATGAAAATTAAGAAGCTTCATGAGAGAAACGTTCATACGCGCCCTAAACTCATTAACAAGTGTGGTGCATGCTATGAGATGTTCACCTCGTATAGAGCGAAGGAAAGACATCTGCGCACAGCGCATGGGATTATCAATAATCGCTTAAAATGTTCGGCTTGCGAGAAACTGTTTCCCAATCCGAATGCTCTGCGGGTACACATTAAAAGAGATCATTTGTTGGAGAGGAGATATAAGTGCACAATGTGCGACATGGGATTCTTTCTGAAATCCGAATTGAACGGACATCTGGTGAAGCATAGCGGGGATAAGTCATATCAGTGCGAAATTTgtaatcGGAGCAAAGTCAAAAAGGACGCTTGTAAGGATACCGAGGTACATGCGATCGAAGATTTTGTAACTGTAccacagaaaaaaaatacacaaaaccgTGAACTgtacaaacatatttataacGTGGAACAGGTTTTGAAATGGTCAAATGCAACTGCGTTTAAAAGTTTTGGAAGAATAGGATACACGTGTTGTTATTGCGGAATGGAATTCCCAGATCCAGCTGTTCTTAAGAAGCATAATCTGGATTTACACAGAGATGGCGTTAAAACCGCAAGCTTTGCACAGCGCAGAGATCTGTGCGCCTTCAATGTCAAACTAGACATTACTGACTTACGTTGTAAAATATGCGAAGTGGCTATCGATAACATCGATAATTTGCTCATTCATTTACGTAGCGCACACCAATTAAAACTATATACAGAAATATTGAATCACATGATTCCGTTCAAATTTGATGGCGACATTTTAAGCTGTTTTATTTGCCAGAACAAGTTTAACCGTTTCAAGAATCTGCTGGAACACATGTCCGTTCACTGCAGGAATTTTATTTGCGAAACGTGCGATGCAGGCTTCGTCAACAAGAGACGTTTGTTGTGCCACAGTAACCAACACAAGCTTGGCGAGTTTAAATGCAGCTTATGCGTAAAGGTTTTCAACACGCTGCAAAAGAAACAATCGCACGAGAAGAATGTCCACTTAACGAAGGGTTATTTGAACCGATGCGGTTACTGCAATGAAGTATTTAAGAGCTATAGGCAAAAGGAGCGCCACCTTGTCCGTGTGCACGAATACAAGTATACAGCGTTGAAATGTGACACGTGCAATAAGCAGTTCACACACCAGAAGGCTTATTACATCCATATCACCAGGGATCACCTCATGCAAAGGAACCATGAGTGTAACTTTTGCGAGATGAAGTTTTACTCGTGGAGCGAACTGAAGGATCATTCGGTGAAGCATACGAAAGTTCGAGAGTTTCAATGCGATGTGTGTTTGAAGTCGTTTGGTAGGCGGGACGCATTGAAACAACACCTGCGGATTCACGCAAACGATAGGCGATACAAGTGTGTGAGGTGCGATCAGACTTTTATACAGAAATGCAGTTGGCGGAGTCATATGAAGACTAAACACGGGGAAACTGTGTAG
- Protein Sequence
- MGSGNLSSTVKKSGIITIQISGSTNQPKEKDITKHRFNASQFMQYSNATPIRYQGSIGFLCCFCNRQYPDPADLKYHSINEHDDDSKFSFLSNKRMCSYIVKMDITNLQCKICAKDMGDLDDLAKHLISAHDKKIYTDIKSFILPLKFGKENLSCYICLQMFNRLKGLQEHMNVHMRNFVCEECDAGFLNQMMLKNHSANHEIGSFKCGFCDNVYVSMKSKKLHERNVHTRSKLIYKCGGCGEMFHSNESKKIHLRKVHNVVSKSLKCAACEKLFQSQKSLRIHVQRDHLVERNFECSMCDMKFFEKQEMILHMVKHSGEKLFQCDVCKKSYGRKKTLREHIRIHLDDRRFKCQYCDKAFVQKCSWRGHMRSKHGSPDNTDSRESDNVSGSWNKTGAITINLRGDAQVRDITKHRHNARQFIQLSNATPIRYQASMGFVCCFCYEQFHDPADLKSHTMNDHDDKCKLKFMSGKSISTYIVKMDITNLQCKLCAENLIDIDALTKHLITVHNKKVYTDVKSYIVPFKFETEDLRCCMCSQVFSRLKALQEHMNVHMRNYTCEICDAGFLNQKMLKNHMEGHESGSFKCDFCENVYASMKIKKLHERNVHTRPKLINKCGACYEMFTSYRAKERHLRTAHGIINNRLKCSACEKLFPNPNALRVHIKRDHLLERRYKCTMCDMGFFLKSELNGHLVKHSGDKSYQCEICNRSKVKKDACKDTEVHAIEDFVTVPQKKNTQNRELYKHIYNVEQVLKWSNATAFKSFGRIGYTCCYCGMEFPDPAVLKKHNLDLHRDGVKTASFAQRRDLCAFNVKLDITDLRCKICEVAIDNIDNLLIHLRSAHQLKLYTEILNHMIPFKFDGDILSCFICQNKFNRFKNLLEHMSVHCRNFICETCDAGFVNKRRLLCHSNQHKLGEFKCSLCVKVFNTLQKKQSHEKNVHLTKGYLNRCGYCNEVFKSYRQKERHLVRVHEYKYTALKCDTCNKQFTHQKAYYIHITRDHLMQRNHECNFCEMKFYSWSELKDHSVKHTKVREFQCDVCLKSFGRRDALKQHLRIHANDRRYKCVRCDQTFIQKCSWRSHMKTKHGETV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -