Basic Information

Gene Symbol
Prp39
Assembly
GCA_949711725.1
Location
CATIXN010000014.1:7074776-7114468[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 8.4 3.3e+04 -3.6 0.0 2 18 673 689 673 698 0.79
2 2 7.3e-30 2.9e-26 92.8 0.1 1 89 1076 1162 1076 1162 0.96

Sequence Information

Coding Sequence
ATGGATGATGATACAAGCTCTGACATTCAGAAGTCCTTAACAGATGCAGCCATGGACACAGAAGATGTTCCATTGATTAATGAAAATTCTAACGGCTTATCACATTTGTTGACCGATGGAGAATTCAACAGCGTTGATGCAGCAGTTGTTGACGATTCTTCTGCATCGAACCAAGGCTTTCTCAACGCTGCAGAACTATCAGCTAGCAGCGTCGGCGATTATTTAGATCGAAATACTGGTTTCAATACAGATTCCTTTGACGTTGGCGACAATGCAGTGAATTATCCCAACGATTCCCTTAGCAATGCGCTTTCAGATGGTGATTCGCGACAAAGTCCTACGTTTAAAACTTCAGATGCAGATCTCTCGGAAAGTAattcaaaaatacaaaatgactGTGACTTTTCCAATGAAGCGGCTACACAAAAAACTATGGATGAAGATAATTCATTGATTGCAATTAATGAAGAGAGCATGACTTCCAATGAAagaaTGGTTATTAACAACATTATTGATGACaatgaaaatgatgaaaaaagaGAAGCCGAGAGAGCCATGGAGTCTGATATGCCAGATATTGATGAAGAGAAATTAACAGACACTAATAAAACAATAGAATTGGAACAAACTAAGGAAGGTGGTAAGGACAATGAGTCTGACAAAGATAATACTCaatctataattaaaaataaaaacaataaagattCACAGGAGAAACAACCAAAGAGTCTAAAAGTAAATGAAACTTGTTCAGAATCAAACGGATCAACAAAGAAAGATACAGTTAAGGTTGGTGGAGCTGAAGAAACAGAAGTAGTCTCTGAAGATGAATTGCCAGCAGTTGAGAAACCCAGTGTGAAAGATGCAGAAAATGTGTCCGATGATGAGTTACCAGGGCCCAAGCCAGCAGAGTTGCCTGCAGACACTGAGGTTGTCTCTGAAGATGAGTTACCAACATCAAAGAAGGAAAGCCGTAAACGAAAACCAGAGGAAGGTGATGATTATGACCCTGAGTCACCAACTACCGAGAAAAAACAGGCAGTGGCAAAGAATGGAGAGAGCAAACCTGTACCTTCTGAAAAGAGGCCCTCAACAGAAGAAAAACCAAAGAAAAAGGCATTACCTGAGCTTGAGAAGTACTGGAAAGTGGTCAATGATGACCCAACAGATTTTACTGGATGGACATATCTACTGCAGTATGTAGATCAAgagAATGATGTGGAAGCTGCCCGGGAGGCTTATGACGCATTTTTGTCACATTACCCATATTGCTATGGCTATTGGAGGAAATATGCCGATTATGAGAAACGCAAAGGAAGTAAAAAGAAGTGCCTTGAAgTATTAGAGAGAGGTCTCAAAGCTATACCTCTGTCAGTGGATCTATGGATCCATTATCTAAATCATATAAAATCCACTCGAACTGAAgatcatatttatataagatcTCAGTATGAGAGAGCTGTGGAGGCCTGTGGATTGGAGTTCCGTTCAGATCGGTTGTGGGAGTCATACATAAAATGGGAAGCAGAGAATTCGTCTGCATTGaatgttacaaatatttatgatCGTTTGCTGGCAACACCTACACTGGGATACACATCACACTTTGATAAtttCCAAGAGCATGTGATGTCAGAGCCTGTCACGGGAGTGATATCGAAGGAGGAGCTCATTCGTCTCCGCGCTGAGGTGCGCGAAGTGACCGGTACTGTGCCGCAGTTAGACCTGCCGCCCGGAGAAGATGAGCCGCTTGACCATGTTGCTTCTGACGAGGAGACTCAAGCTATTAAGGAACGTATCATCGCAGCGCGGAGGAAGGTGCACAAGGTTACAGGGGAACAGGTGGCTGCTCGATGGACCTTTGAGGAAGGGATCAAGCGTCCATACTTCCACGTGAAGCCACTGGAGCGATGCCAACTTAAGAACTGGAAGGCATACCTGGAGTGGGAGAAACATAACGGCTCGCTGAAACGGGCGCTTGTTTTGCACGAACGTTGTCTGATCGCATGTGCGCTATACGAAGAGTTTTGGCTGAGACTAATAAAGTTCCTGCAAGAAAAGTCCGCAAGTCACCCCGAGCTGGTGAATGTGGAGAGAGAGGTTCTGGAGCGCGCGTGCACCGTGCACCACGCCGACAAGCCAGAGCTGCACCTGCTGTGGGCGCACTTCGAGGAGGCTCACGACAATGCGGCCAAGGCGTCTGACATCCTCGAGAAGATCGAGAAGACGTGCCCCAACATGTTGCAGATACAGTACAGGCGAGTGAACTTAGAGAGACGGCGCGGCGACTACGACAAGTGCATACAACTGTACGAAGGATACATCGCGGCGACCAAGAACAAGGCGATCGCGTCCGCGCTGGCCATCAAGTACGCGAGGTTCCATTTCCACGCGCGGAGGGACCCGCCTGCCGCCAGGAAGGTCCTGGATGAGGCCGTGGCCAAGGACCCGCTGAACCAACGGCTGTACATGCAGCGGTTGGATCTGGCGATACACACGCCGGGCACGCCTTACGAACAACTCGAAGTTAATGATGATGTCATTAAAGGCACTCTTCGAGTTGGTAGTACAGTTGAAATTAAACAAGACCCCAAAAAAGATCCAATTGAAGCTGTTATCTCAAAAATTCAAGATTGTAGCCAGTACACTGTTgtttttgatGATGGTGACATCACAACTCTACGGCGTTCAGCACTGTGCTTGAAAAGTGGGAGGCATTTCAATGAAAGTGAAACATTAGATCAACTGCCACTCACACATCCCGAACACTTCTCCACACCAGTGATAGCTGGAAGAAGAGGAAGGAGAGGAAGAGCTCAATCTGATGAGAGTGAGGGAGAAGGCAGTATTCGTTCCATGAAGGCTGACAGTGCGGAAAGAGAGCCTCACGTTGGGCGAGTTGTTCTGGTGGAATCAGCCAGTGGTGCAGAGAGACGTCGACCTCATCAACCTGCGTTTCCTGCGCTCGTTGTAGCGCCAACTGCTCAGATCAAAGTCAAAGAGGATTATCTTGTGAGGTCCTTCAAAGATGGCAGATATTATACCGTGCCAAAGAAAGAAGCGCGCGAGTTTCGCAAGGGAAGCGCACCTCCAGAATGGTGTGGTGTGGAGGCCGcgctacaatatttaaataacggCGTCCTGCCGCCGCACTGGGACCGGGATTCGTTGTTCAATGAACCAAGAAATACTTCAGATGATAGTTCCGATGATGAACCACGTGAGGAGAAAGACCACTTTGTGGCGCAGCTGTATAAGTTTATGGATGACCGGGGCACACCTCTCAACCGCAATCCAACCATTGCAAATAAAGACATAGATCTCTATAGACTATTTAGaGTTGTGCAGAAACTTGGAGGCTATAATCGTGtcacaaatcaaaatcagtggAAGTCGATAGCTGATAAAATGGGCTTTCATCCTGTCACCACTACTATTACGAATCTTTGCAAACAGGCATATAAAAAATTCTTGCACAGCTTCGAGGACTTCTACCGCAAGTTAGGCGTGACGCTAGTAGCGCATCCCCGCGGCGCTCGAACTCCGCCCGCCGGCCGCTCGCTCATCCGTGACAGAGACAAGCAGCTACCTCCTGCCACGGGACCAGCCACCTCCACCGGATCAACCACCACCACATCATCCACTCCCAGTACCTCTAACGCTTCTACACCAACATCCACATCTACCTCGACGTCTCtgAGGAGTAAGGATAAAGATTCAGACAAGAGTGAGACAGAAAAAAGTGAAAAGAGTGAGAAGGAAGAGAAAATTGAGAAGCCGAAGGAGAAACCTGTCAGTGATGAGGAGGATAGTGCGGATAATCAACCCTTGGTACCAGTCAGTACTGCTCATAAAATTGAAAAAGAGAAAGACAAAGAAAAGGACAAGAGTTCAACAACGAGTGAAGAAAAGGTTCCTGTCAAGTCTAGATCTCAATCCAAGACCCGAAGCTTGCCTCCAATCAAGACTGAATCACATGAGAGAAGAACCCCTAAGCGGAGGCCACTGTCTTCTAAATTGGGTGAGAGTTTTGGTGGAACGACCCGCGCATCCCGACGTCCACACGTTTCTACCGACAGTGACAGCTCGGGTCGGGCGTCCAGATGTGGTATTACAAAGAAGATGCAGAGTCGTCGCAGTCAAAGTGCAAACTCTGCGAGTAGCGGCAACACGATCGCGTCCAACGGCAGCAAACGACCTCGTAAGAGAAAGAGTACAGAACCTTCGTCGAATGAGCCCACTCGCGCTCGAGGCTGTAATGTCAAAGCGCAAGTCGGTGATAAATTGAAAGTTTACTACGGGCCTACACAGTCGGAGTCCAAGGTGACATACGAGGCTAAAGTGATCGAGATATCGCGTGAGGGAATGTTGCGCGTGCACTACACGGGTTGGAACACGCGCTACGACGAGTGGATCAAGCCGCAGCGTATTGCGCTCAACGTGACGCAGCACGAGGCGACCAACAAAAAGAGTGGAGGAGGTAATCGTCGTGCGAGAAGTAAAAGATCTGAAgAATCTACGGCTCGTTCAGACAGCGACAGTGATTCTGATAGCGATTTAGATGTAAAAAGGCTGCCCAAGAATCCAGATGATAAGTCAAGTATAAAAACTCCTCCGATCTCCAAAGATGCTAAATCGAGTGACAGTAGTGGTTCGAGTAAGCCACGCAAAAGACCCAGTAGAACTGTTTCCACTACATCAAGTGTTTCACCAGCCAAAAAGCCACGGACGAGTAATACAACCCAACATCAACATCAAGGTCGCGATTATGATCTTAATGAAATACGTTCCGAATTGAAAGGATTGCATTCTGTGAAACAAGAACTTGAAGAAGTAATTAAAACTGAAAATCAACCAAATGAAACAATGCTAAGTGCAGTTGCTACGACTTCAGTCCCTGCGCCAGAACCTGTTCAACCAGAGAAACATGCTGAAGATGTTTACGAATTCAAAGAACCTGAGCCATTTGAGTTTGAACTACATGAtgagaaaaagaaaagaatgcATCGCATATTTGATGATATCTCTCCGACAAAATATACGTCGACATTATCTAAGTCGTTGAGTGAAGAAATATCAGAGGAGGCTTTAAGACCAAGACCTCCGTCTTTTAGATCTCCATCGTTATCTCCATTTAGAGATTTCGCTGGCCGGGATGCTTCTGGAAGACAGAGCCCGGAAGATGATTCTAAAGATGGCTTATTTTCTTTAGATGATGATTCGCTCCCAGGAGAGAGTAGCTCCGGTCCGATTTTTGAAGGATTCACGCCAGCGAAAAACCAAGAAACTtactctaaaaaaaataaagtaacaaaaCTAAGAGAATTAATAGACGATTCTCCTGATagtccagctgatgatgaacGTTCGTCTGAAGATGAACCTGatcttaaaataaaagttgaaCCCCGAGAAGCAAGCTCCATCATGCCATCTTttgcaattataaaaattgaagATATTACAAATGACGAGACCGAGGAACAGACTGAACCTGCTCAAGAAGTACAAGATGCTATTACACTTCTTAAACAATTACCACCGTTAGAATCTATACCCATGCCACCAAATACTCCGCCACCACTTAATAAACCGGATCCAGAAAGTAGGTCTACTTCTCCTGAACCCAATTTAGATGAGACCGACAGCAAATATACTGGTGAAGAATCTTCAAATGAACTAATTAACATTCTTAATATACCACTGCCGACTTCGGAGCCTACCGATACATTAACACTAAAACTAGATAAAGAAAACCTGGACACACCTATTGCGGATGTTTTGCTAAAAATAGGTGAACCAGCATCAAGTCCAATCGACACAGAGGAAGACAAATCCGAACCTGACAGTCCTGCCCGCATCGATGTTCTACCTGAACCACCACCCGGTTTTCTATTGCAGTCTGAAGGTCCTAAAATTGCCGAAAAGCTGCTGAAAGCAATCAATAGTGCCAAACGCTTATCAATGTCTCCACCTCCTGCTGAGAACACGCCAGACACAACCAAAAAAGACAATTCACCTCTAAATGCGTTCAGTGAAAAAATTTCACCATTGCCAATATCTGAAAGTAAGTCTCCAGTTCCAAAGACAGAGCTGCTTGTACCTCCGAATAAAATTGAGCTAACGAAACGACTTAGTCCTGCAGAAATAAAAGAATCTGTCTTTGGGGAGCCATCAAATATTACCGATGCAAAGCGTGATCTGGTGGATATTAAAAAGGTAAAGCCAAAAGAAAGTTCGCCTCCGAGGCTTATGAGCCCTCTGAATATTTTAGAGAGACGAAAAAGCGTCGCCGACTTGCAACTAGCTCCGGGGAAAAATAATAAGGTTCTTAGTGACACGATACAAAAGCTGTCGAGTCAAATAAATCAATCAGTGACGGCCGCTAGCATTACTTTGCCGACTTATCAGCCTGAAGACAGAAGTGAATCTACGGACTCGGACGACTGTGACAACAGGTTGATCATAGACAAGTTGTCTGTGGAGGAGTGGGCCAGCGGTGGTAGCGGGCGGGAGGGTCGTCCGACTCGCGGACCGCACGCGGGGAAGTCGCCGGGGGAGTGGAGTGCGGGGAAGACGTTACTCATGCTGGAGGATGCTTGCAAGAATGAACGGAAACATAGTGAGTGA
Protein Sequence
MDDDTSSDIQKSLTDAAMDTEDVPLINENSNGLSHLLTDGEFNSVDAAVVDDSSASNQGFLNAAELSASSVGDYLDRNTGFNTDSFDVGDNAVNYPNDSLSNALSDGDSRQSPTFKTSDADLSESNSKIQNDCDFSNEAATQKTMDEDNSLIAINEESMTSNERMVINNIIDDNENDEKREAERAMESDMPDIDEEKLTDTNKTIELEQTKEGGKDNESDKDNTQSIIKNKNNKDSQEKQPKSLKVNETCSESNGSTKKDTVKVGGAEETEVVSEDELPAVEKPSVKDAENVSDDELPGPKPAELPADTEVVSEDELPTSKKESRKRKPEEGDDYDPESPTTEKKQAVAKNGESKPVPSEKRPSTEEKPKKKALPELEKYWKVVNDDPTDFTGWTYLLQYVDQENDVEAAREAYDAFLSHYPYCYGYWRKYADYEKRKGSKKKCLEVLERGLKAIPLSVDLWIHYLNHIKSTRTEDHIYIRSQYERAVEACGLEFRSDRLWESYIKWEAENSSALNVTNIYDRLLATPTLGYTSHFDNFQEHVMSEPVTGVISKEELIRLRAEVREVTGTVPQLDLPPGEDEPLDHVASDEETQAIKERIIAARRKVHKVTGEQVAARWTFEEGIKRPYFHVKPLERCQLKNWKAYLEWEKHNGSLKRALVLHERCLIACALYEEFWLRLIKFLQEKSASHPELVNVEREVLERACTVHHADKPELHLLWAHFEEAHDNAAKASDILEKIEKTCPNMLQIQYRRVNLERRRGDYDKCIQLYEGYIAATKNKAIASALAIKYARFHFHARRDPPAARKVLDEAVAKDPLNQRLYMQRLDLAIHTPGTPYEQLEVNDDVIKGTLRVGSTVEIKQDPKKDPIEAVISKIQDCSQYTVVFDDGDITTLRRSALCLKSGRHFNESETLDQLPLTHPEHFSTPVIAGRRGRRGRAQSDESEGEGSIRSMKADSAEREPHVGRVVLVESASGAERRRPHQPAFPALVVAPTAQIKVKEDYLVRSFKDGRYYTVPKKEAREFRKGSAPPEWCGVEAALQYLNNGVLPPHWDRDSLFNEPRNTSDDSSDDEPREEKDHFVAQLYKFMDDRGTPLNRNPTIANKDIDLYRLFRVVQKLGGYNRVTNQNQWKSIADKMGFHPVTTTITNLCKQAYKKFLHSFEDFYRKLGVTLVAHPRGARTPPAGRSLIRDRDKQLPPATGPATSTGSTTTTSSTPSTSNASTPTSTSTSTSLRSKDKDSDKSETEKSEKSEKEEKIEKPKEKPVSDEEDSADNQPLVPVSTAHKIEKEKDKEKDKSSTTSEEKVPVKSRSQSKTRSLPPIKTESHERRTPKRRPLSSKLGESFGGTTRASRRPHVSTDSDSSGRASRCGITKKMQSRRSQSANSASSGNTIASNGSKRPRKRKSTEPSSNEPTRARGCNVKAQVGDKLKVYYGPTQSESKVTYEAKVIEISREGMLRVHYTGWNTRYDEWIKPQRIALNVTQHEATNKKSGGGNRRARSKRSEESTARSDSDSDSDSDLDVKRLPKNPDDKSSIKTPPISKDAKSSDSSGSSKPRKRPSRTVSTTSSVSPAKKPRTSNTTQHQHQGRDYDLNEIRSELKGLHSVKQELEEVIKTENQPNETMLSAVATTSVPAPEPVQPEKHAEDVYEFKEPEPFEFELHDEKKKRMHRIFDDISPTKYTSTLSKSLSEEISEEALRPRPPSFRSPSLSPFRDFAGRDASGRQSPEDDSKDGLFSLDDDSLPGESSSGPIFEGFTPAKNQETYSKKNKVTKLRELIDDSPDSPADDERSSEDEPDLKIKVEPREASSIMPSFAIIKIEDITNDETEEQTEPAQEVQDAITLLKQLPPLESIPMPPNTPPPLNKPDPESRSTSPEPNLDETDSKYTGEESSNELINILNIPLPTSEPTDTLTLKLDKENLDTPIADVLLKIGEPASSPIDTEEDKSEPDSPARIDVLPEPPPGFLLQSEGPKIAEKLLKAINSAKRLSMSPPPAENTPDTTKKDNSPLNAFSEKISPLPISESKSPVPKTELLVPPNKIELTKRLSPAEIKESVFGEPSNITDAKRDLVDIKKVKPKESSPPRLMSPLNILERRKSVADLQLAPGKNNKVLSDTIQKLSSQINQSVTAASITLPTYQPEDRSESTDSDDCDNRLIIDKLSVEEWASGGSGREGRPTRGPHAGKSPGEWSAGKTLLMLEDACKNERKHSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-