Ljuv022716.1
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- stc
- Assembly
- GCA_949711685.1
- Location
- CATIXL010000029.1:4528492-4538787[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.3 1.4e+04 -2.6 1.6 15 19 31 35 30 35 0.81 2 12 0.027 3e+02 2.8 1.4 2 10 63 71 63 71 0.92 3 12 7.9e-05 0.87 10.9 16.3 4 19 79 94 77 94 0.93 4 12 3 3.3e+04 -3.7 0.5 6 10 120 124 119 125 0.60 5 12 7.1e-07 0.0079 17.5 13.0 3 19 132 148 130 148 0.91 6 12 1.1 1.2e+04 -2.3 0.2 5 10 178 183 175 183 0.80 7 12 0.00035 3.9 8.8 13.6 1 19 189 207 189 207 0.99 8 12 9.1e-07 0.01 17.1 12.3 1 19 248 270 248 270 0.88 9 12 1.8 2e+04 -3.0 1.7 6 10 300 304 300 304 0.95 10 12 0.00076 8.5 7.8 7.2 1 12 310 321 310 321 0.94 11 12 0.032 3.6e+02 2.6 0.7 4 10 325 331 324 331 0.92 12 12 9.1e-07 0.01 17.1 14.3 3 19 339 355 337 355 0.92
Sequence Information
- Coding Sequence
- ATGCTTATTGAGGTGTCCATTTTAGCTAGTAATAGAATTTCTTATGCGGAATTTTtgatacttaaaatatttatagaggGTAAATGGCGTTGTCCGGCATGTCAGAACACCAGTGAAGAAATACCAACTGAGTACCGTTGCATGTGTGGGGCAATGCGCTCTCCGGAATACCAGAGAGGAGGAAATGGTGCTCACACCTGTGGCAAGGCATGCAAGAGGCCTCGGAGCTGTCCTCATCCCTGCACACTCCTGTGTCATCCAGGCCCGTGTCCGGCTTGCCAAGCAACCATATCTAAGAAATGTGGATGTGGTGCAGAAACCCGCTCTGTGCTATGCAGCAGCAAACTGCCACAGGAGTGTGGGAGGAAGTGTGATCATCTGCTCAATTGTGAGGTGCATAAGTGTGCCCGAGACTGCCATGAGGGTCCCTGTGACCCCTGCCAGGAGACTGTCACTCAAGTGTGCTACTGTCCGGCTGCAAAGAGTCGCAGTGTGGCTTGTACGGCGGAGAGTAGCCGCGAGGGCCAGTGGTCGTGCGAGGCATCATGCGCCCGTGTCCTAGCGTGCGGAGCGCACGTGTGCCGACGTGAGTGTCACCCGCCTCCGTGCGACGCGTGCCCACTGCGGCCCGGGAATGTACCCACTTGCCCCTGTGGAAACACCAGacTCAAAAGTGGAGAACGCAAGTCTTGCACAGACCCCATACCATTATGCGATAACATTTGTGCCAAGCCTCTTGAGTGTGGGCCCGATGGTGATAAGCACTTCTGTAAAGAGAAATGTCATGAAGGCCCATGTCGAGTTTGTCCTGATACGACACTGGTGCAGTGCCGCTGTGGTCACTTGACGCGTGACATTCCCTGCGCTGACTATCCGAGTCAGCGGAACGAGGTGTTCTGTCAGAGGAAGTGTAACAagAAGCTGTCGTGCGGGCGCCACCGATGCCGCGCCACGTGCTGTGACTCGGTGTCTCACCGCTGCTCGCTGGTGTGTGGCCGCTCACTGTCCTGCCAGTTGCACCGGTGCGAGGCTCTCTGCCACACGGGCCACTGCGCGCCGTGCCCGCAGCTCAgtgaagagcgcaattgtagtgacgctcagaatttttggatttttcaataa
- Protein Sequence
- MLIEVSILASNRISYAEFLILKIFIEGKWRCPACQNTSEEIPTEYRCMCGAMRSPEYQRGGNGAHTCGKACKRPRSCPHPCTLLCHPGPCPACQATISKKCGCGAETRSVLCSSKLPQECGRKCDHLLNCEVHKCARDCHEGPCDPCQETVTQVCYCPAAKSRSVACTAESSREGQWSCEASCARVLACGAHVCRRECHPPPCDACPLRPGNVPTCPCGNTRLKSGERKSCTDPIPLCDNICAKPLECGPDGDKHFCKEKCHEGPCRVCPDTTLVQCRCGHLTRDIPCADYPSQRNEVFCQRKCNKKLSCGRHRCRATCCDSVSHRCSLVCGRSLSCQLHRCEALCHTGHCAPCPQLSEERNCSDAQNFWIFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -